View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9823_low_5 (Length: 219)

Name: NF9823_low_5
Description: NF9823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9823_low_5
NF9823_low_5
[»] chr4 (2 HSPs)
chr4 (132-206)||(11412807-11412881)
chr4 (1-37)||(45787866-45787902)
[»] chr8 (1 HSPs)
chr8 (1-40)||(27746498-27746537)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-38)||(40322-40359)
[»] chr7 (4 HSPs)
chr7 (1-38)||(12211698-12211735)
chr7 (1-38)||(21370598-21370635)
chr7 (1-38)||(31713058-31713095)
chr7 (10-38)||(21574275-21574303)
[»] chr5 (3 HSPs)
chr5 (1-38)||(11926665-11926702)
chr5 (1-38)||(12317313-12317350)
chr5 (1-38)||(13038617-13038654)
[»] chr3 (3 HSPs)
chr3 (1-38)||(31538001-31538038)
chr3 (1-38)||(50582989-50583026)
chr3 (1-37)||(36660768-36660804)
[»] chr1 (2 HSPs)
chr1 (1-38)||(15059565-15059602)
chr1 (1-38)||(29057500-29057537)
[»] chr2 (3 HSPs)
chr2 (1-37)||(17324764-17324800)
chr2 (10-38)||(30467002-30467030)
chr2 (10-38)||(36390738-36390766)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 11412807 - 11412881
Alignment:
Q  132 gcttcataaacagatatgaagaaaaggataacaaagtgaaaatagtatggaatacctttctatctagcacaattt 206  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  11412807 gcttcataaacatatttgaagaaaaggataacaaaatgaaaatagtatgaaatatctttctatctagcacaattt 11412881  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45787866 - 45787902
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatg 37  Q
    |||||||| || |||||||||||||||||||||||||    
T  45787866 caagattccaagccaaccactaggccaaccccaaatg 45787902  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27746498 - 27746537
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatggat 40  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  27746498 caagatcccaaaccaaccactaggccaaccccaaatggat 27746537  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40359 - 40322
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  40359 caagatcctaagccaaccactaggccaaccccaaatgg 40322  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12211698 - 12211735
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  12211698 caagatcctaagccaaccactaggccaaccccaaatgg 12211735  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21370635 - 21370598
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  21370635 caagatcccaaaccaaccactaggccaaccccaaatgg 21370598  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31713058 - 31713095
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  31713058 caagatcccaaaccaaccactaggccaaccccaaatgg 31713095  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 21574275 - 21574303
Alignment:
Q  10 aaaccaaccactaggccaaccccaaatgg 38  Q
    |||||||||||||||||||||||||||||    
T  21574275 aaaccaaccactaggccaaccccaaatgg 21574303  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11926665 - 11926702
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  11926665 caagatcccaaaccaaccactaggccaaccccaaatgg 11926702  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12317313 - 12317350
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||||| || ||||||||||||||||||||||||||    
T  12317313 caagattccaagccaaccactaggccaaccccaaatgg 12317350  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13038617 - 13038654
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  13038617 caagatcccaaaccaaccactaggccaaccccaaatgg 13038654  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31538001 - 31538038
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  31538001 caagatcctaagccaaccactaggccaaccccaaatgg 31538038  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50583026 - 50582989
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  50583026 caagatcccaaaccaaccactaggccaaccccaaatgg 50582989  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36660804 - 36660768
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatg 37  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  36660804 caagatcctaaaccaaccactaggtcaaccccaaatg 36660768  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15059565 - 15059602
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||||| || ||||||||||||||||||||||||||    
T  15059565 caagattccaagccaaccactaggccaaccccaaatgg 15059602  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29057500 - 29057537
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatgg 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  29057500 caagatcccaaaccaaccactaggccaaccccaaatgg 29057537  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17324800 - 17324764
Alignment:
Q  1 caagattctaaaccaaccactaggccaaccccaaatg 37  Q
    |||||| | ||||||||||||||||||||||||||||    
T  17324800 caagataccaaaccaaccactaggccaaccccaaatg 17324764  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 30467002 - 30467030
Alignment:
Q  10 aaaccaaccactaggccaaccccaaatgg 38  Q
    |||||||||||||||||||||||||||||    
T  30467002 aaaccaaccactaggccaaccccaaatgg 30467030  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 36390738 - 36390766
Alignment:
Q  10 aaaccaaccactaggccaaccccaaatgg 38  Q
    |||||||||||||||||||||||||||||    
T  36390738 aaaccaaccactaggccaaccccaaatgg 36390766  T

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