View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9823_low_6 (Length: 218)
Name: NF9823_low_6
Description: NF9823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9823_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 35408230 - 35408415
Alignment:
| Q |
15 |
cataggaatactagtcatcttcatcttcatttgtagaggttgaaggatatatcaaacaagacttcaatggctaaaattttatatctcaaggataccatta |
114 |
Q |
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| T |
35408230 |
cataggaatactagtcatcttcatcttcatttgtagaggctgaaggatatatcaaacaagacttcaatggctaaaattttatatctcaaggataccatta |
35408329 |
T |
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| Q |
115 |
ttttcgtcctcgctctggcttttgtgatcgagattgtttctgtgagttttctcnnnnnnnccttacttcatattcgtcagccttac |
200 |
Q |
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| T |
35408330 |
ttttcgtcctcgctctggcttttgtaatcaagattgtttctgtgagttttctctttgtttccttgcttcatattcgtcacccttac |
35408415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 20873353 - 20873267
Alignment:
| Q |
81 |
atggctaaaattttatatctcaaggataccattattttcgtcctcgctctggcttttgtgatcgagattgtttctgtgagttttctc |
167 |
Q |
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| T |
20873353 |
atggctaaaattgtatatctcagagatgccattactttcatccttgccatggctattgtgatccaatttgtctctgtgagttttctc |
20873267 |
T |
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