View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9825_high_1 (Length: 426)
Name: NF9825_high_1
Description: NF9825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9825_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Complemental strand, 16854580 - 16854179
Alignment:
| Q |
5 |
cagttgaaacattgattattatattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagttttgggttcatttttgtgcacatg |
104 |
Q |
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| T |
16854580 |
cagttgaaacattgattattatattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagttttgggttcatttttgtgcacatg |
16854481 |
T |
|
| Q |
105 |
agcatatgaattgttctgcatttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagctacatgaaccgcaatatattgga |
204 |
Q |
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| T |
16854480 |
agcatatgaattgttctgcatttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagctacatgaaccgcaatatattgga |
16854381 |
T |
|
| Q |
205 |
ataattaactaggaatagaaatattcatttcaaaacaaaaatatcaaaattttctaattagcttttgaagtgagtatataaaaagaaagaaaacaatatt |
304 |
Q |
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| T |
16854380 |
ataattaactaggaatagaaatattcatttcaaaacaaaaat------attttctaattagcttttgaagtgagtatataaaaagaaagaaaacaatatt |
16854287 |
T |
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| Q |
305 |
ttcaacatagatggacgatgaatgctattgaattatatatacctttgcagcaagaatttgtgcaccaacatacttgtcatcccagctaaacatcgttctt |
404 |
Q |
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| T |
16854286 |
ttcaacatagatggacgatgaatgctattgaattatatatacctttgcagcaagaatttgtgcaccaacatacttgtcatcccagctaaacatcgttctt |
16854187 |
T |
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| Q |
405 |
gcaccccc |
412 |
Q |
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| T |
16854186 |
gcaccccc |
16854179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 26 - 269
Target Start/End: Original strand, 13774469 - 13774699
Alignment:
| Q |
26 |
tattaccccatggctgaaaccataacaaacaaacctcctggtgttttctgaaagttttgggttcatttttgtgcacatgagcatatgaattgttctgcat |
125 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||||| |
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| T |
13774469 |
tattaccccatggctgaaaccataaca----aacctcctggtgttttctgaaaattttgagttgatttttgtgcacatgaacatatgaattgttctgcat |
13774564 |
T |
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| Q |
126 |
ttgctttgtattgagcccaaatacccgaagactccaccgtcgcatctaaaacaagctacatgaac--cgcaatatattggaataattaactaggaataga |
223 |
Q |
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| T |
13774565 |
ttgctttgtattgagtccaaatacctgaagactccactgtcccatctaaaacaagctacatgatcgacgcaatataacagaataattaagtagtaataaa |
13774664 |
T |
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| Q |
224 |
aatattcatttcaaaacaaaaatatcaaaattttctaattagcttt |
269 |
Q |
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| T |
13774665 |
aacatt-----------aaaaatatcaaaattttctaattagcttt |
13774699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 13774705 - 13774793
Alignment:
| Q |
321 |
gatgaatgctattgaattatatatacctttgcagcaagaatttgtgcaccaacatacttgtcatcccagctaaacatcgttcttgcacc |
409 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||| ||||| |
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| T |
13774705 |
gatgaatgctattgagttatatatacctttgcagcaagaatctgtgcaccaagatacttgtcatcccaactaaacattgttctagcacc |
13774793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 17264711 - 17264846
Alignment:
| Q |
53 |
aacaaacctcctggtgttttctgaaagttttgggttcatttttgtgcacatgagcatatgaattgttctgcatttgctttgtattgagcccaaatacccg |
152 |
Q |
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||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |
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| T |
17264711 |
aacaaacctcccagtgttttttgaaagttttgagttgatttttgtgcacatgagcatatgaattgttctgcattttctttgtattgatcccaaatacctg |
17264810 |
T |
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| Q |
153 |
aagactccaccgtcgcatctaaaacaagctacatga |
188 |
Q |
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| T |
17264811 |
aagactctactgtcccatctaaaacaagctacatga |
17264846 |
T |
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