View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9825_high_3 (Length: 215)

Name: NF9825_high_3
Description: NF9825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9825_high_3
NF9825_high_3
[»] chr7 (11 HSPs)
chr7 (16-198)||(22696695-22696877)
chr7 (61-196)||(13726070-13726205)
chr7 (21-130)||(19835105-19835211)
chr7 (73-150)||(48825895-48825972)
chr7 (61-126)||(2898177-2898242)
chr7 (82-133)||(19423676-19423727)
chr7 (79-150)||(24237450-24237521)
chr7 (79-146)||(37179967-37180034)
chr7 (71-133)||(21534164-21534226)
chr7 (75-125)||(46661261-46661311)
chr7 (84-196)||(29453041-29453153)
[»] chr1 (8 HSPs)
chr1 (61-150)||(25711091-25711180)
chr1 (74-132)||(19635602-19635660)
chr1 (74-126)||(50740760-50740812)
chr1 (79-149)||(36496810-36496880)
chr1 (73-132)||(32226436-32226495)
chr1 (73-150)||(25892665-25892742)
chr1 (73-126)||(31460637-31460690)
chr1 (73-125)||(37491228-37491280)
[»] chr6 (3 HSPs)
chr6 (74-150)||(15584963-15585039)
chr6 (74-147)||(31462750-31462823)
chr6 (73-150)||(2252423-2252500)
[»] chr8 (6 HSPs)
chr8 (61-125)||(13341350-13341414)
chr8 (74-145)||(25029343-25029413)
chr8 (61-123)||(27708212-27708274)
chr8 (74-131)||(28852613-28852670)
chr8 (73-132)||(14358496-14358555)
chr8 (73-126)||(22576347-22576400)
[»] chr4 (9 HSPs)
chr4 (61-145)||(3124935-3125019)
chr4 (74-126)||(51850712-51850764)
chr4 (74-133)||(52643125-52643184)
chr4 (76-150)||(11389142-11389216)
chr4 (73-150)||(12049549-12049626)
chr4 (73-150)||(49600085-49600162)
chr4 (73-143)||(54856752-54856822)
chr4 (73-126)||(36557024-36557077)
chr4 (81-126)||(43437819-43437864)
[»] chr3 (5 HSPs)
chr3 (74-126)||(30485151-30485203)
chr3 (73-146)||(3987279-3987352)
chr3 (73-146)||(41653752-41653824)
chr3 (73-146)||(41653897-41653969)
chr3 (74-126)||(31203325-31203377)
[»] chr5 (6 HSPs)
chr5 (61-132)||(8117163-8117233)
chr5 (74-133)||(13094318-13094377)
chr5 (80-133)||(13024140-13024193)
chr5 (75-126)||(30874926-30874977)
chr5 (74-126)||(28461452-28461504)
chr5 (73-126)||(1374462-1374515)
[»] scaffold0380 (1 HSPs)
scaffold0380 (74-126)||(10994-11046)
[»] chr2 (5 HSPs)
chr2 (73-146)||(35819004-35819076)
chr2 (81-150)||(45710089-45710158)
chr2 (61-133)||(12733076-12733147)
chr2 (73-133)||(17316378-17316438)
chr2 (73-146)||(7154970-7155043)
[»] scaffold0172 (1 HSPs)
scaffold0172 (74-125)||(31034-31085)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 22696695 - 22696877
Alignment:
Q  16 gacgtaggtgagaagagataaaaatttgaaaagttttagggtctacaaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctacta 115  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22696695 gacgcaggtgagaagagataaaaatttgaaaagtgttagggtctacaaaattcccttcaaaaggttttaaaaatagggtaaatttggaaatttcctacta 22696794  T
Q  116 aaatcaaatagtggctgacacggccgctatccgctgcgtacctctctaccgcaatagcagctgaagcggaagctatttgatcc 198  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  22696795 aaatcaaatagcggctgacgcggccgctatccgctacgtacctctctaccgctatagcagctgaagcggaagctatttgatcc 22696877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 13726205 - 13726070
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctct 160  Q
    |||||| ||||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||   ||||  |||| |||| ||||| || ||| ||    
T  13726205 caaaatgccctaaaaaaggtttttaaaatagggtcaatttgaaaatttcctactaaaatcaaatagcatctgaagcggctgctaaccgctccgcaccgct 13726106  T
Q  161 ctaccgcaatagcagctgaagcggaagctatttgat 196  Q
     |  ||| ||||||||||||||||  ||||||||||    
T  13726105 atgtcgctatagcagctgaagcggccgctatttgat 13726070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 19835211 - 19835105
Alignment:
Q  21 aggtgagaagagataaaaatttgaaaagttttagggtctacaaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatc 120  Q
    |||||| |||||| ||||| ||||||| | | ||||| ||| ||||  |||  |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  19835211 aggtgaaaagagagaaaaagttgaaaaatgtcagggtttacgaaat--cctcaaaaaggttttaaaaatagagtcaatttggaaatttcctac-aaaatc 19835115  T
Q  121 aaatagtggc 130  Q
    ||||||||||    
T  19835114 aaatagtggc 19835105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 48825972 - 48825895
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||| ||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||  |||| ||||||||||    
T  48825972 caaaatgttttaaaaatagggtcaatttgaaaattttcaactaaaatcaaatagcggctgaagcggctgctatccgct 48825895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 2898242 - 2898177
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    |||||| ||||  ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  2898242 caaaatgccctcaaaaaggttttacaaatagggtcaatttagaaatttgctactaaaatcaaatag 2898177  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 19423727 - 19423676
Alignment:
Q  82 ttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    ||||||||||||||||| || |||||||||||||||||||||||| ||||||    
T  19423727 ttaaaaatagggtcaatatgaaaatttcctactaaaatcaaatagcggctga 19423676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 24237450 - 24237521
Alignment:
Q  79 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    |||| |||||||  ||||||||| |||||| | ||||||||||||||| ||||||  |||||| ||||||||    
T  24237450 gtttgaaaaataatgtcaatttgaaaattttcaactaaaatcaaataggggctgaagcggccgttatccgct 24237521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 37180034 - 37179967
Alignment:
Q  79 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 146  Q
    ||||| ||||||| ||||||||| |||||| | |||||||||||||||  |||||  |||||||||||    
T  37180034 gtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcagctgaagcggccgctatc 37179967  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 21534226 - 21534164
Alignment:
Q  71 ttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    |||||||  ||||||||||| ||||||||||| || || | ||||||||||||||| ||||||    
T  21534226 ttcaaaatattttaaaaatatggtcaatttggtaaatttcaactaaaatcaaatagcggctga 21534164  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 46661261 - 46661311
Alignment:
Q  75 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 125  Q
    |||||||||||||||| | |||||||| |||||| ||| ||||||||||||    
T  46661261 aaaggttttaaaaataagatcaatttgaaaattttctattaaaatcaaata 46661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 196
Target Start/End: Original strand, 29453041 - 29453153
Alignment:
Q  84 aaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgctgcgtacctctctaccgcaatagcagctgaagcg 183  Q
    ||||| ||| |||||||| |||||||||| ||||||||||||| || |||  ||||||| || |||| |  | | || | |||| |||||||||||| ||    
T  29453041 aaaaaaaggatcaatttgaaaatttcctattaaaatcaaatagcggttgaagcggccgccatacgctccacatcgctatgccgctatagcagctgaaacg 29453140  T
Q  184 gaagctatttgat 196  Q
    || ||| ||||||    
T  29453141 gacgctgtttgat 29453153  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 25711091 - 25711180
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    |||||| ||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  25711091 caaaataccctaaaaaaggttttaaaaatagggtcaatttcgaaatttcctaataaaatcaaattgtggctgaagcggccgctatccgct 25711180  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 19635660 - 19635602
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19635660 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagcggctg 19635602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 50740812 - 50740760
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  50740812 aaaaggttttaaaaataggatcaatttggaaatttcctactaaaatcaaatag 50740760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 36496880 - 36496810
Alignment:
Q  79 gttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgc 149  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  ||||||  ||||||||||||||    
T  36496880 gttttaaaaatagggttaatttagaaatttcctactaaaatcaaataccggctgaagcggccgctatccgc 36496810  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 32226436 - 32226495
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 132  Q
    ||||| |||| ||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  32226436 caaaatgtttcaaaaatagggtcaatttggaaattttcaactaaaatcaaatagcggctg 32226495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 25892742 - 25892665
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||| ||||||||||||| ||||| ||| | |||| | ||||||||||| ||| || |||  |||||||||||||||    
T  25892742 caaaatgttttaaaaatagtgtcaaattgaatattttcaactaaaatcaattagaggttgaagcggccgctatccgct 25892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 31460690 - 31460637
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    |||||||||||||||||| | | | ||||||||||| | |||||||||||||||    
T  31460690 caaaaggttttaaaaataagtttagtttggaaattttcaactaaaatcaaatag 31460637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 37491228 - 37491280
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 125  Q
    ||||| |||| |||||||||||||||||| |||| | | ||||||||||||||    
T  37491228 caaaatgtttgaaaaatagggtcaatttgaaaatattcaactaaaatcaaata 37491280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 15584963 - 15585039
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||  |||||||||||||||    
T  15584963 aaaagtttttaaaaatagggtcaatttgaaaatttcctactaaaatcaaatggcggctgaagcggccgctatccgct 15585039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 31462750 - 31462823
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatcc 147  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||  |||||  ||||||||||||    
T  31462750 aaaaggttttaaaaataggctcaatttagaaatttcctactaaaatcaaacagctgctgaagcggccgctatcc 31462823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 2252423 - 2252500
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||| |||||||||||| ||||||||||||||||| | |||||||||||| ||  |||||  |||||||||||||||    
T  2252423 caaaatgttttaaaaatatggtcaatttggaaattttcaactaaaatcaaacagcagctgaagcggccgctatccgct 2252500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 13341414 - 13341350
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 125  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13341414 caaaatgccctcaaaaaggttttcaaaatagggtcaatttggaaatttcctactaaaatcaaata 13341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 25029413 - 25029343
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctat 145  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||  ||||||||||    
T  25029413 aaaaggttttaaaaatagggtcaatttggaaa-ttccttctgaaatcaaatagcggctgaagcggccgctat 25029343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 27708212 - 27708274
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaa 123  Q
    |||||| ||||  ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27708212 caaaatgccctaaaaaaggttttaaaaatagggtcaatttggaaatttcggactaaaatcaaa 27708274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 28852670 - 28852613
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggct 131  Q
    ||||||||||||||||||||| |||||  ||| ||| |||||||||||||||| ||||    
T  28852670 aaaaggttttaaaaatagggtaaatttaaaaaattcttactaaaatcaaatagcggct 28852613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 14358555 - 14358496
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 132  Q
    ||||| ||||||||||||| || |||||| |||||| | ||||||||||||||| |||||    
T  14358555 caaaatgttttaaaaatagtgtaaatttgaaaattttcaactaaaatcaaatagcggctg 14358496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 22576347 - 22576400
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||| ||||||||||||| | ||||||| |||||| | |||||||||||||||    
T  22576347 caaaatgttttaaaaatagtgacaatttgaaaattttcaactaaaatcaaatag 22576400  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 3125019 - 3124935
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctat 145  Q
    |||||| ||||  ||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||  ||||||||||    
T  3125019 caaaatgccctaaaaaagattttaaaaatagtgtcaatttgaaaatttcctgctaaaatcaaatagtggctgaagcggccgctat 3124935  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 51850712 - 51850764
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51850712 aaaaggttttaaaaatatggtcaatttggaaatttcctactaaaatcaaatag 51850764  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 52643184 - 52643125
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||    
T  52643184 aaaaggttttaaaaatagggtcaatttggaaatttccttctaaaatcaaacagcggctga 52643125  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 11389142 - 11389216
Alignment:
Q  76 aaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||||||||||||| ||||||||| |||| |||||| ||||||||||||| || |||  |||||||||||||||    
T  11389142 aaggttttaaaaatatggtcaatttagaaaattcctattaaaatcaaatagcggttgaagcggccgctatccgct 11389216  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 12049626 - 12049549
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||| ||| |||||||| ||||||||||||||||| | ||||||||||||||| | ||||  |||||||||||||||    
T  12049626 caaaatgttctaaaaatatggtcaatttggaaattttcaactaaaatcaaatagcgtctgaagcggccgctatccgct 12049549  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 49600162 - 49600085
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| || |||  || ||||||||||||    
T  49600162 caaaatgttttaaaaatagtgtcaatttgaaaattttcgactaaaatcaaatagcggttgaagcgtccgctatccgct 49600085  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 54856822 - 54856752
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgct 143  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| || |||  ||||||||    
T  54856822 caaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcggttgaagcggccgct 54856752  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 36557024 - 36557077
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||| ||||| |||||| ||||||||||||||||| | | |||||||||||||    
T  36557024 caaaatgtttttaaaatatggtcaatttggaaattttcaattaaaatcaaatag 36557077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 43437819 - 43437864
Alignment:
Q  81 tttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||||| |||||| ||||||||  |||||||||||||||||||||    
T  43437819 tttaaaattagggttaatttggagttttcctactaaaatcaaatag 43437864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 30485151 - 30485203
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30485151 aaaaggttttaaaaatatggtcaatttggaaatttcctactaaaatcaaatag 30485203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 3987352 - 3987279
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 146  Q
    ||||| ||||| |||||| ||||||||||||||||| | ||||||||||||||| ||||||  ||||| |||||    
T  3987352 caaaatgtttttaaaatatggtcaatttggaaattttcaactaaaatcaaatagcggctgaagcggccactatc 3987279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 41653824 - 41653752
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 146  Q
    ||||| ||||||||||||  | ||||||| |||||| | ||||||||||||||| ||||||  |||||||||||    
T  41653824 caaaatgttttaaaaataatgccaatttgaaaattttcaactaaaatcaaatag-ggctgaagcggccgctatc 41653752  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 41653969 - 41653897
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 146  Q
    ||||| ||||||||||||  ||||||||| |||||| | ||||||||||||||  ||||||  |||||||||||    
T  41653969 caaaatgttttaaaaataatgtcaatttgaaaattttcaactaaaatcaaata-cggctgaagcggccgctatc 41653897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 31203377 - 31203325
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    |||||||||||||||| | ||||||||  |||||||||| |||||||| ||||    
T  31203377 aaaaggttttaaaaattgagtcaatttaaaaatttcctattaaaatcatatag 31203325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 8117233 - 8117163
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctg 132  Q
    |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  8117233 caaaatgccctaaaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaat-aaatagcggctg 8117163  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 13094318 - 13094377
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  13094318 aaaaggttttaaaaatatggtcaatttggaaatttcctagtaaaatcaaatagtcgctga 13094377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 13024140 - 13024193
Alignment:
Q  80 ttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||| |||||    
T  13024140 ttttaaaaatatggtcaatttggaaatttcctagtaaaatcaaatagtcgctga 13024193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 30874926 - 30874977
Alignment:
Q  75 aaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||||||    
T  30874926 aaaggttttaaaaatatggtgaatttaaaaatttcctactaaaatcaaatag 30874977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 28461452 - 28461504
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    |||| |||||||||| || ||||||||  ||||||||||||||||||||||||    
T  28461452 aaaaagttttaaaaacagagtcaatttaaaaatttcctactaaaatcaaatag 28461504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 1374515 - 1374462
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    ||||| ||||| ||||||| ||||||||| |||||| | |||||||||||||||    
T  1374515 caaaatgtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatag 1374462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 10994 - 11046
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatag 126  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10994 aaaaggttttaaaaatagggtcaacttggaaatttcctactaaaattaaatag 11046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 35819076 - 35819004
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 146  Q
    ||||||||||||||| |||| | ||||||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  35819076 caaaaggttttaaaa-taggcttaatttggaaatttccaactaaaatcaaatagcggctgaagcggccgctatc 35819004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 45710089 - 45710158
Alignment:
Q  81 tttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatccgct 150  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||  ||||||  || | ||||||||||    
T  45710089 tttaaaaatagggtcaatttgaaaatttcctaccaaaatcaaataacggctgaagcgcctgctatccgct 45710158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 12733076 - 12733147
Alignment:
Q  61 caaaattcccttcaaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    |||||| ||||  ||||||||||||||||| || |  |||| |||||||||||||||||||||||||||||||    
T  12733076 caaaatgccctcaaaaaggttttaaaaatatggccg-tttgaaaatttcctactaaaatcaaatagtggctga 12733147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 17316378 - 17316438
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctga 133  Q
    ||||| ||||||||||||| ||||||||| |||||| | ||||||||||||||| ||||||    
T  17316378 caaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagcggctga 17316438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 7154970 - 7155043
Alignment:
Q  73 caaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaatagtggctgacacggccgctatc 146  Q
    ||||| ||||||||||||| |||||| || |||||| | ||||||||||||||| ||| ||  |||||||||||    
T  7154970 caaaatgttttaaaaatagtgtcaatatgaaaattttcaactaaaatcaaatagcggccgaagcggccgctatc 7155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 31034 - 31085
Alignment:
Q  74 aaaaggttttaaaaatagggtcaatttggaaatttcctactaaaatcaaata 125  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||||    
T  31034 aaaatgttttaaaaatacggtcaatttgaaaatttcctactaaaatcaaata 31085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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