View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9825_low_2 (Length: 365)
Name: NF9825_low_2
Description: NF9825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9825_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 45169116 - 45168775
Alignment:
| Q |
18 |
ataccaaattatttcaatagctagaaataaaaatggtagaagggaaaaacaaattagcaacaaaagtagtgataaataaaattgaatttctctataattc |
117 |
Q |
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| T |
45169116 |
ataccaaattatttcactagctagaaataaaaatggtagaagggaaaaacaaattagcaacaaaagtagtgataaataaaattgaatttctctataattc |
45169017 |
T |
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| Q |
118 |
ggtggttactaaaacataatgctttaccaatagggagctacactttgatgcaaaaaacaccgatcgggtcgtatcctccaataggttttgtgcgaccaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45169016 |
ggtggttactaaaacataatgctttaccaatagggagctacgctttgatgcaaaaaacaccgatcgggtcgtatcctccaatagattttgtgcgaccaag |
45168917 |
T |
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| Q |
218 |
agttatggcccagtaaatatgagggcccgtagagctatcccataagtttgactctctttgaatagagatagtgtgaagcatttgttga----taatcact |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45168916 |
agttatggcccgataaatatgagggcccgtagagctatcccataagtctgactctctttgaatagagatagtgtgaagcatttgttgataattaatcact |
45168817 |
T |
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| Q |
314 |
ctttccttttgttttcctcatgaatcccaccattttcctatg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168816 |
ctttccttttgttttcctcatgaatcccaccattttcctatg |
45168775 |
T |
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