View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9825_low_3 (Length: 276)
Name: NF9825_low_3
Description: NF9825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9825_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 14150893 - 14150646
Alignment:
| Q |
16 |
tgattccagatgatctgaggtgatcaagagaacgacatccgatgagctctgctcaggagaataagaacatatcacatctaaaatgaaaaatcagaagtaa |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14150893 |
tgattctagatgatctgaggtgatcaagagaacgacgtccgatgagctctgctcaggagaataagaacataccacatctaaaatgaaaaatcagaagtaa |
14150794 |
T |
|
| Q |
116 |
caagtagatgataggatgactccacttgagaagcatagaagacaccagttgtgctgctaaagtcttcaataaccctccgtctgaagagatttagtcgggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14150793 |
caagtagatgataggatgactccacttgagaagcatagaagacaccagttgtgctgctaaagtcttcaataaccctccgtctgaagagatttagtcgggt |
14150694 |
T |
|
| Q |
216 |
gggcaccctatc---aagtagctgaattaccttattgggggtccaaat |
260 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
14150693 |
gggcaccctatcctgaagtagctgaattaccttattggggttccaaat |
14150646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University