View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_high_1 (Length: 751)
Name: NF9826_high_1
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 360 - 732
Target Start/End: Complemental strand, 22125636 - 22125246
Alignment:
| Q |
360 |
ggagctatagtttcttcaattatagtaatcattttgtaaaatacatttgaagctaatagttgttttattttataactctactcctgtttcactccatttg |
459 |
Q |
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| T |
22125636 |
ggagctatagtttcttcaattatattaatcattttgtaaaatacatttgaagctaatagttgttttattttataactctactcctgtttcactccatttg |
22125537 |
T |
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| Q |
460 |
tgtaaaaggatgttatcccnnnnnnnnnnnnctgtactgtgaacactgaatcctcaactg--------------------aacctgggtgttgtctcatt |
539 |
Q |
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| T |
22125536 |
tgtaaatggatgttatcccttttttctttttctgtactgcgaacattgaatcctcaactgggctcttggtaaagttgcagaacctgggtgttgtctcatt |
22125437 |
T |
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| Q |
540 |
gcagtccatgtagtttagatttcaggtagcaaaagaaattacttcaatgaagattatcaaaagtacttaatctggcactataattttccccttaaacatt |
639 |
Q |
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| T |
22125436 |
gcagtccatttagttaagatt-caggtagcaaaagaatttacttcaatgaagattattaaaagtactta-tctggcactataattttccccttaaacatt |
22125339 |
T |
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| Q |
640 |
ttaaaattctccttattagtacacaaagttacttcaatgcggactttgtttggaaaacaaacagtctgatatttagaggtttcatgaaggcct |
732 |
Q |
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| T |
22125338 |
ttaaaattctccttattagtacacgaagttacttcaatgcggactttgtttggaaaacaaacagtctgatatttagaggtttcatgatggcct |
22125246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 22126006 - 22125693
Alignment:
| Q |
11 |
tagcataggttaaataacaatgagattagaatctataaaaatgtaatttgagatgttttttatctttaaaacatccgtttgagatttatggattttgtgt |
110 |
Q |
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| T |
22126006 |
tagcataggttaaataacaatgagattagaatctataaaaatgtaatttgagatgttttttatctttaaaacatccgtttgagatttatgaattttgtct |
22125907 |
T |
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| Q |
111 |
caacaatagagtgatgcgaaagggacttaactcaatttggttcactgtcatttgatcaacatcaagaggtgaatatgaatcaagtagtcgagggtatcaa |
210 |
Q |
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| T |
22125906 |
caacaatagagtgatgcgaaagggacttaactcaatttggttgactgtcatttgatcaacatcaagagttgaatatgaatcaagtagtcgagggtatcaa |
22125807 |
T |
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| Q |
211 |
gcacttatcaatttggttgattgtattt---------------------ttgataaccttggactaatttattaatatattgttctttacgttgatgggg |
289 |
Q |
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| T |
22125806 |
gcacttatcaatttggttgattgtatttttgaatgattatctattatttttgataaccttggactaatttattaatatattgttctttacgttgatgggg |
22125707 |
T |
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| Q |
290 |
gtaacataaaccaa |
303 |
Q |
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| T |
22125706 |
gtaacataaaccaa |
22125693 |
T |
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