View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9826_high_11 (Length: 417)

Name: NF9826_high_11
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9826_high_11
NF9826_high_11
[»] chr5 (10 HSPs)
chr5 (16-417)||(36227394-36227797)
chr5 (342-411)||(16458053-16458121)
chr5 (341-410)||(29925767-29925836)
chr5 (328-408)||(42500302-42500382)
chr5 (342-401)||(15015778-15015837)
chr5 (344-387)||(25461744-25461787)
chr5 (361-411)||(14932236-14932285)
chr5 (341-390)||(7999132-7999181)
chr5 (342-387)||(25461019-25461064)
chr5 (352-412)||(35445992-35446052)
[»] chr3 (11 HSPs)
chr3 (343-411)||(12862322-12862389)
chr3 (342-406)||(51929439-51929504)
chr3 (342-406)||(35696187-35696251)
chr3 (344-411)||(30956700-30956767)
chr3 (344-411)||(30972512-30972579)
chr3 (341-390)||(1508675-1508725)
chr3 (343-401)||(5331222-5331279)
chr3 (341-411)||(20170449-20170519)
chr3 (342-388)||(20880404-20880450)
chr3 (343-401)||(29520563-29520620)
chr3 (345-401)||(29520415-29520470)
[»] chr4 (12 HSPs)
chr4 (343-406)||(43505884-43505947)
chr4 (342-411)||(31076460-31076529)
chr4 (343-411)||(54069491-54069559)
chr4 (341-388)||(33587051-33587098)
chr4 (344-410)||(25904285-25904351)
chr4 (341-406)||(403453-403518)
chr4 (328-409)||(42404074-42404155)
chr4 (345-401)||(15177286-15177342)
chr4 (343-411)||(41336689-41336756)
chr4 (356-408)||(44797827-44797879)
chr4 (343-411)||(45935294-45935362)
chr4 (328-401)||(54425958-54426031)
[»] chr6 (3 HSPs)
chr6 (342-406)||(30536637-30536701)
chr6 (342-411)||(30536405-30536474)
chr6 (343-390)||(18076124-18076171)
[»] chr2 (8 HSPs)
chr2 (341-412)||(32592513-32592583)
chr2 (365-411)||(1875076-1875122)
chr2 (365-411)||(42420368-42420414)
chr2 (342-390)||(15305584-15305632)
chr2 (343-390)||(20933683-20933730)
chr2 (343-401)||(26201956-26202015)
chr2 (343-412)||(23974565-23974632)
chr2 (369-411)||(24100880-24100922)
[»] chr1 (11 HSPs)
chr1 (350-409)||(45661185-45661244)
chr1 (342-411)||(42391293-42391361)
chr1 (365-411)||(45145176-45145222)
chr1 (328-373)||(32491466-32491511)
chr1 (342-410)||(14385838-14385906)
chr1 (341-412)||(18556853-18556923)
chr1 (365-411)||(41184724-41184770)
chr1 (343-388)||(37473327-37473372)
chr1 (342-387)||(42174784-42174829)
chr1 (343-388)||(44932029-44932074)
chr1 (355-411)||(5063403-5063459)
[»] chr8 (11 HSPs)
chr8 (341-411)||(35644055-35644125)
chr8 (343-407)||(14956373-14956437)
chr8 (342-390)||(32975987-32976035)
chr8 (344-411)||(12497305-12497372)
chr8 (341-390)||(38353276-38353324)
chr8 (350-400)||(6525753-6525803)
chr8 (341-390)||(1058169-1058218)
chr8 (365-409)||(16736034-16736078)
chr8 (328-408)||(16825614-16825694)
chr8 (328-411)||(25930628-25930712)
chr8 (342-390)||(29168147-29168195)
[»] chr7 (15 HSPs)
chr7 (75-136)||(26779372-26779433)
chr7 (341-390)||(48140142-48140191)
chr7 (349-401)||(45806410-45806462)
chr7 (344-411)||(420289-420356)
chr7 (348-411)||(31247602-31247665)
chr7 (343-406)||(45806556-45806619)
chr7 (342-409)||(20234408-20234477)
chr7 (343-385)||(21568728-21568770)
chr7 (347-388)||(31247666-31247707)
chr7 (343-407)||(31744237-31744301)
chr7 (343-390)||(23989579-23989626)
chr7 (344-390)||(4970883-4970929)
chr7 (341-411)||(46078073-46078143)
chr7 (349-390)||(45004700-45004741)
chr7 (341-389)||(9210554-9210602)


Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 36227394 - 36227797
Alignment:
Q  16 acatcacaatagaagaaggaaaagataacttatgttgtttttcttatttcagaactgaacattttatgggtcatagacaagaaaatcaaagttccgaaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36227394 acatcacaatagaagaaggaaaagataacttatgttgtttttcttatttcagaactgaacattttatgcgtcatagacaagaaaatcaaagttccgaaat 36227493  T
Q  116 cataaaatatcttagacattattaaccaaccaacacattcacattcttggctacagacatagttagatgaacatcactcacatgaataagcagatcatca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36227494 cataaaatatcttagacattattaaccaaccaacacattcacattcttggctacagacatagttagatgaacatcactcacatgaataagcagatcatca 36227593  T
Q  216 atttagaagttcatgataatcatctcatttttctaaatataaagaatttgacgagaacaataa--acaagaatcttaaccattacaagcattaagggagt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  36227594 atttagaagttcatgataatcatctcatttttctaaatataaagaatttgacgagaacaataaacacaataatcttaaccattacaagcattaagggagt 36227693  T
Q  314 gtttggatcatcaacttatagcacagccgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtataca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36227694 gtttggatcatcaacttatagcacagccgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcgttaaattgattttgtataca 36227793  T
Q  414 atat 417  Q
    ||||    
T  36227794 atat 36227797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 16458121 - 16458053
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||| | |||||||| |||||||||    
T  16458121 gcttatatataagcttgcataagctatttttatagcaaaagataaaataac-ttaaattgtttttgtata 16458053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 410
Target Start/End: Original strand, 29925767 - 29925836
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtat 410  Q
    |||||| ||||| |||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||    
T  29925767 cgcttaagtatatgcttgcataagctatttttatagcaaaagataaaatagcgttaaattgtttctgtat 29925836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 42500382 - 42500302
Alignment:
Q  328 cttatagcacagccgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgt 408  Q
    |||||||||||  |||| |||||||||||||| ||| ||||||||||| ||||||||||||||   |||||||| ||||||    
T  42500382 cttatagcacaagcgctaatgtataagcttgcataagctatttttatatcaaaagataaaataaagttaaattgtttttgt 42500302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 15015778 - 15015837
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    |||||||||||||||||| ||| |||||||| ||||||||| | ||||| | ||||||||    
T  15015778 gcttatgtataagcttgcataagctatttttgtagcaaaaggtgaaataacgttaaattg 15015837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 25461787 - 25461744
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaa 387  Q
    |||| ||||||||||| ||| |||||||||||||||||||||||    
T  25461787 ttatatataagcttgcataagctatttttatagcaaaagataaa 25461744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 14932236 - 14932285
Alignment:
Q  361 taatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||||||||||||||||   |||||||| |||||||||    
T  14932236 taatctatttttatagcaaaagataaaataaagttaaattg-ttttgtata 14932285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 7999132 - 7999181
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    ||||||||||||||||||| |||  ||||||||| ||||||| |||||||    
T  7999132 cgcttatgtataagcttgcataagttatttttatggcaaaaggtaaaata 7999181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 25461019 - 25461064
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaa 387  Q
    |||||| ||||||||||| ||| |||||||| ||||||||||||||    
T  25461019 gcttatatataagcttgcgtaagctatttttctagcaaaagataaa 25461064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 35445992 - 35446052
Alignment:
Q  352 aagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtatac 412  Q
    |||||| | ||| |||||||||||||||| |||||||||   |||||||| ||||||||||    
T  35445992 aagcttacataagctatttttatagcaaatgataaaataaagttaaattgtttttgtatac 35446052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 12862389 - 12862322
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  12862389 cttatgtttaagcttgcataatctatttttatagcaaaagataaaatagatttaaattg-ttttgtata 12862322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 51929504 - 51929439
Alignment:
Q  342 gcttatgtataagctt-gcttaatctatttttatagcaaaagataaaatagcattaaattgatttt 406  Q
    |||||||||||||||| || |||  |||||||||||||||||||||||||||||||||||| ||||    
T  51929504 gcttatgtataagctttgcataagatatttttatagcaaaagataaaatagcattaaattgttttt 51929439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 35696187 - 35696251
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgatttt 406  Q
    |||| ||||| | ||||| ||| ||||||||||||||||||||||| || |||||||||| ||||    
T  35696187 gcttttgtatgaacttgcgtaagctatttttatagcaaaagataaactaacattaaattgttttt 35696251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 30956767 - 30956700
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||| |||||||| | ||| |||||| |||||||||||||||||||   |||||||| |||||||||    
T  30956767 ttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 30972579 - 30972512
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||| |||||||| | ||| |||||| |||||||||||||||||||   |||||||| |||||||||    
T  30972579 ttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgtttttgtata 30972512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 1508725 - 1508675
Alignment:
Q  341 cgcttatgtataagcttgcttaatcta-tttttatagcaaaagataaaata 390  Q
    ||||||||||||||||||| ||| ||| |||||| ||||||||||||||||    
T  1508725 cgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 1508675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 5331222 - 5331279
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    ||||||||||||||||| ||| ||| ||||||||||||||| |||||| | ||||||||    
T  5331222 cttatgtataagcttgcataagcta-ttttatagcaaaagagaaaataacgttaaattg 5331279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 411
Target Start/End: Original strand, 20170449 - 20170519
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||| |||||||  || |||||||||  |||||||||||||||   |||||||| |||||||||    
T  20170449 cgcttatgtatcagcttgcacaagctatttttactgcaaaagataaaataatgttaaattgtttttgtata 20170519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 20880404 - 20880450
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaa 388  Q
    |||||||||||||||| | ||| |||||||||||||||| |||||||    
T  20880404 gcttatgtataagcttacataagctatttttatagcaaatgataaaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 29520620 - 29520563
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |||||| | ||||||||    
T  29520620 cttatgtataagcttgcataagctatttt-atagcaaaagagaaaataacgttaaattg 29520563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 29520470 - 29520415
Alignment:
Q  345 tatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    ||||||||||||||| ||| ||||||||| |||||||||||| ||| | ||||||||    
T  29520470 tatgtataagcttgcataagctattttta-agcaaaagataacataacgttaaattg 29520415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 43505884 - 43505947
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgatttt 406  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| | |||||||| ||||    
T  43505884 cttatgtataagcttgcataagctatttttatagcaaaagataaaataacgttaaattgttttt 43505947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 31076529 - 31076460
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||   ||||| || |||||||||    
T  31076529 gcttatgtataagcttgcataagctatttttagagcaaaagataaaataagtttaaactgtttttgtata 31076460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 54069559 - 54069491
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||| ||  ||||||||||| ||||||||||||||   |||||||| |||||||||    
T  54069559 cttatgtataagcttgcatatgctatttttatatcaaaagataaaataatgttaaattgtttttgtata 54069491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 33587098 - 33587051
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaa 388  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  33587098 cgcttatgtataagcttgcataagctatttttatagcgaaagataaaa 33587051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 410
Target Start/End: Complemental strand, 25904351 - 25904285
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtat 410  Q
    |||| ||||||||| | ||| ||||||||| ||||||||||||||||   |||||||||||||||||    
T  25904351 ttatatataagcttacataagctatttttacagcaaaagataaaataaagttaaattgattttgtat 25904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 403453 - 403518
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgatttt 406  Q
    ||||||| ||||||||||| |||  || |||||||||||||||||||||| | |||||||| ||||    
T  403453 cgcttatctataagcttgcgtaagttacttttatagcaaaagataaaataacgttaaattgttttt 403518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 409
Target Start/End: Complemental strand, 42404155 - 42404074
Alignment:
Q  328 cttatagcacagccgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgta 409  Q
    |||||||||||  | |||||||||||| |||| ||  || |||||||||||||||||||||||   |||||||| |||||||    
T  42404155 cttatagcacaagcacttatgtataagtttgcatacgctctttttatagcaaaagataaaataatgttaaattgtttttgta 42404074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 15177342 - 15177286
Alignment:
Q  345 tatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    ||||||||||||||| ||| ||||||| ||||| |||||||||||| | ||||||||    
T  15177342 tatgtataagcttgcataagctattttaatagctaaagataaaataacgttaaattg 15177286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 41336689 - 41336756
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||| |||||| ||| ||||||||||||| ||||||||||||   |||||||| |||||||||    
T  41336689 cttatgtataggcttgcataagctatttttatagc-aaagataaaataaagttaaattgtttttgtata 41336756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 44797827 - 44797879
Alignment:
Q  356 ttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgt 408  Q
    |||| ||| |||||||||||||||||||||||| | | |||||||||||||||    
T  44797827 ttgcataagctatttttatagcaaaagataaaacaacgttaaattgattttgt 44797879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 45935362 - 45935294
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||| ||| |||| ||||||||||||||| || || | |||| ||| |||||||||    
T  45935362 cttatgtataagcttgcataagctatgtttatagcaaaagattaattaacgttaatttgtttttgtata 45935294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 54425958 - 54426031
Alignment:
Q  328 cttatagcacagccgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    |||||| ||||  ||||||||||||||||||| ||| ||| |||| |||||  |||||||||| || |||||||    
T  54425958 cttatatcacaagcgcttatgtataagcttgcataagctacttttgtagcagcagataaaataacactaaattg 54426031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 30536701 - 30536637
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgatttt 406  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||| | |||||||| ||||    
T  30536701 gcttatgtataagcttgcataagctatttttatagcaaaagataagataacgttaaattgttttt 30536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 30536405 - 30536474
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||| |||| ||| ||||| |||||||||| |||||||||   |||||||| |||||||||    
T  30536405 gcttatgtataagtttgcataagctattattatagcaaatgataaaataatgttaaattgtttttgtata 30536474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 18076124 - 18076171
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||||    
T  18076124 cttatgtataagcttgcataagttatttttatagcaaaagagaaaata 18076171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 32592513 - 32592583
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtatac 412  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||||||   |||||||| ||||||||||    
T  32592513 cgcttatgtataagcttgcataaactatttttatagaaaaagataaaataatgttaaattg-ttttgtatac 32592583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 1875076 - 1875122
Alignment:
Q  365 ctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||    
T  1875076 ctattgttatagcaaaagataaaataacattaaattgcttttgtata 1875122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 42420414 - 42420368
Alignment:
Q  365 ctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||    
T  42420414 ctatttttatagcaaaagataaaataacgttaaattgtttttgtata 42420368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 15305584 - 15305632
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||| ||||||||||||| ||| |||||||||||||||| |||||||||    
T  15305584 gcttgtgtataagcttgcataagctatttttatagcaaatgataaaata 15305632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 20933683 - 20933730
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||||||||| |||||| ||||||||||||| | ||||||||||||||    
T  20933683 cttatgtataggcttgcataatctatttttacaacaaaagataaaata 20933730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 26201956 - 26202015
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaa-agataaaatagcattaaattg 401  Q
    ||||| ||||||||||| ||| |||||||||||||||| |||||||||| | ||||||||    
T  26201956 cttatatataagcttgcataagctatttttatagcaaagagataaaataacgttaaattg 26202015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 23974632 - 23974565
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtatac 412  Q
    |||||| |||||||| ||||| |||||||||||| |||||| |||||||  |||||||| |||| |||||    
T  23974632 cttatgcataagcttacttaagctatttttatagaaaaagacaaaatag--ttaaattgcttttttatac 23974565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 24100880 - 24100922
Alignment:
Q  369 ttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||||| ||||||| |||||| |||||||||||||    
T  24100880 ttttatagcaaaaggtaaaataacattaatttgattttgtata 24100922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 45661244 - 45661185
Alignment:
Q  350 ataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgta 409  Q
    ||||||||||||||   |||||||||||||||||||||||| |||||||||| |||||||    
T  45661244 ataagcttgcttaagtcatttttatagcaaaagataaaataacattaaattgtttttgta 45661185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 42391293 - 42391361
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||||||||||||| ||||||||||| | ||| | |||||| |||||||||| |||||||||    
T  42391293 gcttatgtataagcttgcttaaactatttttataacgaaaca-aaaataacattaaattgtttttgtata 42391361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 45145176 - 45145222
Alignment:
Q  365 ctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  45145176 ctatttttatagcaaaagataaaataatattaaattgtttttgtata 45145222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 32491466 - 32491511
Alignment:
Q  328 cttatagcacagccgcttatgtataagcttgcttaatctattttta 373  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||    
T  32491466 cttatagcacaaccgcttatgtataagcttgcataagctattttta 32491511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 14385906 - 14385838
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtat 410  Q
    ||||||||||||||| ||  || ||||||||||||||||||||| ||||   |||||||| ||||||||    
T  14385906 gcttatgtataagctggcagaaactatttttatagcaaaagatagaataatgttaaattgtttttgtat 14385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 412
Target Start/End: Original strand, 18556853 - 18556923
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtatac 412  Q
    ||||| ||||||||||||  ||| |||||||||| |||||||||||||||   |||||||| ||||||||||    
T  18556853 cgcttgtgtataagcttgtataagctatttttattgcaaaagataaaatattgttaaattg-ttttgtatac 18556923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 411
Target Start/End: Complemental strand, 41184770 - 41184724
Alignment:
Q  365 ctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||||||||||||   |||||||| |||||||||    
T  41184770 ctatttttatagcaaaagataaaataatgttaaattgtttttgtata 41184724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 37473327 - 37473372
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaa 388  Q
    ||||||||||||||| | ||| |||||||||||||||| |||||||    
T  37473327 cttatgtataagcttacataagctatttttatagcaaatgataaaa 37473372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 387
Target Start/End: Original strand, 42174784 - 42174829
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaa 387  Q
    |||||||||||||||||| ||  ||||||||||| |||||||||||    
T  42174784 gcttatgtataagcttgcataggctatttttatatcaaaagataaa 42174829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 44932074 - 44932029
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaa 388  Q
    |||| |||||||||||| ||| |||| |||||||||||||||||||    
T  44932074 cttaggtataagcttgcataaactatatttatagcaaaagataaaa 44932029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 5063403 - 5063459
Alignment:
Q  355 cttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||| ||| |||||||||||  ||||||||||||| |||||| ||| |||||||||    
T  5063403 cttgcataaactatttttatactaaaagataaaataacattaacttgtttttgtata 5063459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 35644125 - 35644055
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||||||||| |||||||| | |||||||||||| || | |||||||| ||| |||||    
T  35644125 cgcttatgtataagcttgcttaagctatttttctggcaaaagataaattaccgttaaattgttttcgtata 35644055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 14956437 - 14956373
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttg 407  Q
    ||||||||||||||||| ||| |||||||||| | ||||||| ||||| |||||||||| |||||    
T  14956437 cttatgtataagcttgcataagctatttttattgtaaaagatgaaataacattaaattgtttttg 14956373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 390
Target Start/End: Original strand, 32975987 - 32976035
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||||| ||||||||||| ||| ||||||||||||||||||||||||||    
T  32975987 gcttatatataagcttgcataagctatttttatagcaaaagataaaata 32976035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 411
Target Start/End: Complemental strand, 12497372 - 12497305
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||   |||| ||| |||||||||    
T  12497372 ttatgtataagcttgcataagccatttttatagcaaaagataaaataaagttaacttgtttttgtata 12497305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 38353276 - 38353324
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  38353276 cgcttatgtataagcttgcataagctatttttat-gcaaaagataaaata 38353324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 6525753 - 6525803
Alignment:
Q  350 ataagcttgcttaatctatttttatagcaaaagataaaatagcattaaatt 400  Q
    |||||||||| ||| |||||||||||||||||  ||||||| |||||||||    
T  6525753 ataagcttgcataagctatttttatagcaaaaactaaaataacattaaatt 6525803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 1058218 - 1058169
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    ||||||||||||||||| | ||| ||||||||||||||||  ||||||||    
T  1058218 cgcttatgtataagcttacataagctatttttatagcaaatcataaaata 1058169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 16736034 - 16736078
Alignment:
Q  365 ctatttttatagcaaaagataaaatagcattaaattgattttgta 409  Q
    ||||||| |||||||||||||||||| |||||||| | |||||||    
T  16736034 ctattttgatagcaaaagataaaataacattaaatagtttttgta 16736078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 16825694 - 16825614
Alignment:
Q  328 cttatagcacagccgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgt 408  Q
    ||||||| |||  ||||||||||||| ||||| ||| ||||| |||||| ||| |||||||||   |||||||| ||||||    
T  16825694 cttatagaacaagcgcttatgtataaccttgcataagctattcttatagtaaaggataaaataatgttaaattgtttttgt 16825614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 25930712 - 25930628
Alignment:
Q  328 cttatagcacagc-cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||| | ||||||||||||||| | ||| |||||| ||||| ||| ||| |||||  |||||| || |||||||||    
T  25930712 cttatagcacagcgctcttatgtataagcttacataagctatttctataggaaaggatgaaataaaattaaaatgtttttgtata 25930628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 29168195 - 29168147
Alignment:
Q  342 gcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||||||||||||||  | ||| |||||| |||||||||||||||||||    
T  29168195 gcttatgtataagctcacataagctatttctatagcaaaagataaaata 29168147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 26779372 - 26779433
Alignment:
Q  75 cattttatgggtcatagacaagaaaatcaaagttccgaaatcataaaatatcttagacatta 136  Q
    |||||| || |||||||||||||||| ||| || || |||||||||||||||||||||||||    
T  26779372 cattttgtgtgtcatagacaagaaaaacaaggtaccaaaatcataaaatatcttagacatta 26779433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 341 - 390
Target Start/End: Original strand, 48140142 - 48140191
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  48140142 cgcttatgtataagcttgcataagctatttttataacaaaagataaaata 48140191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 401
Target Start/End: Complemental strand, 45806462 - 45806410
Alignment:
Q  349 tataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattg 401  Q
    ||||||||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  45806462 tataagcttgcataagctatttttatagcaaaagataaaataacgttaaattg 45806410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 411
Target Start/End: Original strand, 420289 - 420356
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||||   || ||||| |||||||||    
T  420289 ttatgtataagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtata 420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 31247665 - 31247602
Alignment:
Q  348 gtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    |||||||||||| ||| |||||||||||||||||||| ||||| |  ||||||| |||||||||    
T  31247665 gtataagcttgcataagctatttttatagcaaaagatgaaataacgataaattggttttgtata 31247602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 406
Target Start/End: Complemental strand, 45806619 - 45806556
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgatttt 406  Q
    ||||||||||||||||| ||| |||| |||||||||||||| |||||| | |||||||| ||||    
T  45806619 cttatgtataagcttgcataagctatgtttatagcaaaagagaaaataacgttaaattgttttt 45806556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 20234408 - 20234477
Alignment:
Q  342 gcttatgtataagcttgcttaatcta--tttttatagcaaaagataaaatagcattaaattgattttgta 409  Q
    |||||||||||||| ||| ||| |||  |||||||||||||||||||||||  ||||||||| |||||||    
T  20234408 gcttatgtataagcatgcataagctaaatttttatagcaaaagataaaatataattaaattgtttttgta 20234477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 21568770 - 21568728
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagata 385  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  21568770 cttatgtataagcttgcataagctatttttatagcaaaagata 21568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 31247707 - 31247666
Alignment:
Q  347 tgtataagcttgcttaatctatttttatagcaaaagataaaa 388  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  31247707 tgtataagcttgcataagctatttttatagcaaaagataaaa 31247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 31744237 - 31744301
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttg 407  Q
    ||||||||||| ||||| ||| ||||||| ||||  |||||||||||||| |||||||| |||||    
T  31744237 cttatgtataaacttgcataacctattttcatagttaaagataaaatagcgttaaattgtttttg 31744301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 23989626 - 23989579
Alignment:
Q  343 cttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||||||||||| |||| ||| |||||||||||| |||||||||||||    
T  23989626 cttatgtataagtttgcataaactatttttatagtaaaagataaaata 23989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 4970929 - 4970883
Alignment:
Q  344 ttatgtataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||||||||||||| | ||| |||||| |||||||||||||||||||    
T  4970929 ttatgtataagcttacataagctatttctatagcaaaagataaaata 4970883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 411
Target Start/End: Original strand, 46078073 - 46078143
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaatagcattaaattgattttgtata 411  Q
    ||||||||||||||||| | |||  ||||||||||| ||||||||||| |   |||||||| |||||||||    
T  46078073 cgcttatgtataagcttacataagttatttttatagaaaaagataaaacaaagttaaattgtttttgtata 46078143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 390
Target Start/End: Original strand, 45004700 - 45004741
Alignment:
Q  349 tataagcttgcttaatctatttttatagcaaaagataaaata 390  Q
    |||| |||||| ||| ||||||||||||||||||||||||||    
T  45004700 tatatgcttgcataaactatttttatagcaaaagataaaata 45004741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 9210554 - 9210602
Alignment:
Q  341 cgcttatgtataagcttgcttaatctatttttatagcaaaagataaaat 389  Q
    ||||||||||||||||||| ||| ||| |||||||| |||| |||||||    
T  9210554 cgcttatgtataagcttgcataagctacttttatagaaaaaaataaaat 9210602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University