View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9826_high_12 (Length: 417)
Name: NF9826_high_12
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 623610 - 623220
Alignment:
| Q |
17 |
actctttattatttgttgcgacaatatatacttgctctgagtatgcatgggagaacaaacaactattttctaatcatcagtaatatgtccatgaaatttc |
116 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
623610 |
actcattattatttgttgcgataatatatacttgctctgagtatgcatgggagaacaaacaactattttctaatcatcagtaatatgtccttgaaatttc |
623511 |
T |
|
| Q |
117 |
atagactcaaaaccatgcaatgtgaagtaaatatctatgatgaaatttttattgtagaatgttagagttaatgcatttcatcttttcaagttcaagatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
623510 |
atagactcaaaaccatgcaatgtgaagtaaatatctatgatgaaatttttattgtagaatgttagagttaatgcatttcatcttttcaagttcaagatat |
623411 |
T |
|
| Q |
217 |
ctttctctgtcctttttggttcatattagattttttccatgttgatctaccgatgtattctgaaaatattttatgaatcaaaacagttattcgaatgtac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
623410 |
ctttctctgtcctttttggttcatattagattttttccatgttgatctaccgatgtattctgaaaatattttatgaatcaaaacagttattcgaatgtac |
623311 |
T |
|
| Q |
317 |
atatttgacaaaaactgccaaggatttttagaaattaaagaatctatacaatttaagttgtcagaaatctgttcatattttagcatctgtg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
623310 |
atatttgacaaaaactgccaaggatttttagaaattaaagaatctatacaatttaagttgtcagaaatctgttcgtattttagcatctgtg |
623220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 21201107 - 21201073
Alignment:
| Q |
17 |
actctttattatttgttgcgacaatatatacttgc |
51 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21201107 |
actctttattacttgttgcgacaatatatacttgc |
21201073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University