View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_high_24 (Length: 313)
Name: NF9826_high_24
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 53651654 - 53651357
Alignment:
| Q |
14 |
atggacatcttacatgagaatgatgagagcacttatgaacggttagattaaaaataaacggtcaagattaaaaacaacattttgaacaaccatatgactc |
113 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53651654 |
atggatatcttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacagtcaagattaaaaacaacattttgaacaaccatatgactc |
53651555 |
T |
|
| Q |
114 |
tccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaactgcaatttcaagacagatctgagaaaatcattccattgaga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
53651554 |
tccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatatgagaaaatcattccattgaga |
53651455 |
T |
|
| Q |
214 |
ttattaaccctagctgtaagtattttatgaaattgaaattctagatctagatgaatttgacaaaattgtttaatatgacaattaaactcaaaaatgaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53651454 |
ttattaaccctagctgtaagtattttatgaaattgtaattctagatctagatgaattttacaaaattgtttaatatgacaattaaactcaaaaatgaa |
53651357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 33960171 - 33960137
Alignment:
| Q |
249 |
aaattctagatctagatgaatttgacaaaattgtt |
283 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
33960171 |
aaattctagatctagatgaatttgacaaaattgtt |
33960137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 56459786 - 56459730
Alignment:
| Q |
27 |
atgagaatgatgagagcacttatgaacggttagattaaaaataaacggtcaagatta |
83 |
Q |
| |
|
||||||||| ||||| ||||||| ||| |||||||||||||||| |||| |||||| |
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|
| T |
56459786 |
atgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta |
56459730 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 116 - 311
Target Start/End: Original strand, 17490365 - 17490560
Alignment:
| Q |
116 |
catagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaactgcaatttcaagacagatctgagaaaatcattccattgagatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17490365 |
catagcctatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagatt |
17490464 |
T |
|
| Q |
216 |
attaaccctagctgtaagtattttatgaaattgaaattctagatctagatgaatttgacaaaattgtttaatatgacaattaaactcaaaaatgaa |
311 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
17490465 |
attaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaa |
17490560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 116 - 311
Target Start/End: Complemental strand, 17562849 - 17562654
Alignment:
| Q |
116 |
catagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaactgcaatttcaagacagatctgagaaaatcattccattgagatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17562849 |
catagcctatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagatt |
17562750 |
T |
|
| Q |
216 |
attaaccctagctgtaagtattttatgaaattgaaattctagatctagatgaatttgacaaaattgtttaatatgacaattaaactcaaaaatgaa |
311 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
17562749 |
attaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaa |
17562654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 39323255 - 39323287
Alignment:
| Q |
249 |
aaattctagatctagatgaatttgacaaaattg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39323255 |
aaattctagatctagatgaatttgacaaaattg |
39323287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 34064913 - 34064853
Alignment:
| Q |
27 |
atgagaatgatgagagcacttatgaacggttagattaaaaataaacggtcaagattaaaaa |
87 |
Q |
| |
|
||||||||| ||||| ||||||| ||| |||||||||||||||| |||| |||||||||| |
|
|
| T |
34064913 |
atgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaaa |
34064853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 54515789 - 54515893
Alignment:
| Q |
27 |
atgagaatgatgagagcacttatgaacggttagattaaaaataaacggtcaagattaaaaacaacattttgaacaa-ccatatgactctccatagcctat |
125 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||| ||| ||||| | | |||||||||||| |||||| ||||| |||| ||||||||| || ||||| |
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|
| T |
54515789 |
atgagaatgatgagaatacttgtgaacctttagatcaaatataaatgattcagattaaaaacatcattttaaacaatccatgtgactctccctatcctat |
54515888 |
T |
|
| Q |
126 |
caatt |
130 |
Q |
| |
|
||||| |
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|
| T |
54515889 |
caatt |
54515893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 19402357 - 19402413
Alignment:
| Q |
27 |
atgagaatgatgagagcacttatgaacggttagattaaaaataaacggtcaagatta |
83 |
Q |
| |
|
||||||||| ||||| ||||||| ||| |||||||||||||||| |||| |||||| |
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|
| T |
19402357 |
atgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta |
19402413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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