View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_high_29 (Length: 263)
Name: NF9826_high_29
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7200699 - 7200946
Alignment:
| Q |
1 |
gtatcacttggctccaaaagataataacctcagaagccaaaccatggtgctgaatggcattccactcaagttaacaaatacaggggatattccaacaatg |
100 |
Q |
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| T |
7200699 |
gtatcacttgactccaaaagataataacctcagaagccaaaccatggtgctgaatggcattccactcaagttaacaaataaaggggatattccaacaatg |
7200798 |
T |
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| Q |
101 |
gatccagtgcacaataatgtgaaatctccaatacacatagctcctttgtccattgcatttattgtgtacccaaactttgatgctccagcttgtgccaggc |
200 |
Q |
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| T |
7200799 |
gatccagtgcacaataatgtgaaatcttcaatacacatagctcctttgtccattgcatttattgtgtacctaaactttgatgctccagcttgtgccaggc |
7200898 |
T |
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| Q |
201 |
actgaaaactatatagccttgtaaactaggccttaaaaataaggaact |
248 |
Q |
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| T |
7200899 |
actgaaaactatatagccttgtaaactaggccttaaaaataaggaact |
7200946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 7207328 - 7207572
Alignment:
| Q |
1 |
gtatcacttggctccaaaagataataacctcagaagccaaaccatggtgctgaatggcattccactcaagttaacaaatacaggggatattccaacaatg |
100 |
Q |
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| T |
7207328 |
gtatcacttaactccaaaagataataatctcagaagccaaaccatggtgctgaatggcattccacttaagttaacaaataaaggggatattccagcaatg |
7207427 |
T |
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| Q |
101 |
gatccagtgcacaataatgtgaaatctccaatacacatagctcctttgtccattgcatttattgtgtacccaaactttgatgctccagcttgtgccaggc |
200 |
Q |
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| T |
7207428 |
gatccagtgcaaaataatgtgaaatctccaatatacatagatcctttgtccattgcatttattgtgtacccaaactttgatgctccagcttgtgccaggc |
7207527 |
T |
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| Q |
201 |
actgaaaactatatagccttgtaaactaggccttaaaaataaggaa |
246 |
Q |
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| T |
7207528 |
actcaaaactataaag-cttgtaaactaggccttaaaaatatggaa |
7207572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 7213331 - 7213545
Alignment:
| Q |
1 |
gtatcacttggctccaaaagataataacctcagaagccaaaccatggtgctgaatggcattccactcaagttaacaaatacaggggatattccaacaatg |
100 |
Q |
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| T |
7213331 |
gtatcacttaactccaaaagataataatctcagaagccataccatggtgctgaatggcattccactcaagttaacaaataaaggggatattccaacaatg |
7213430 |
T |
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| Q |
101 |
gatccagtgcacaataatgtgaaatctccaatacacatagctcctttgtccattgcatttattgtgtacccaaactttgatgctccagcttgtgccaggc |
200 |
Q |
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| T |
7213431 |
aatccagtgcacaataatgtgaaatctccaatatacatagctcctttgtccattgcttttattttgtacccaaactttgatgctccagcttgtgccaggc |
7213530 |
T |
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| Q |
201 |
a--ctgaaaactata |
213 |
Q |
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| T |
7213531 |
actctgaaaactata |
7213545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 7193051 - 7193164
Alignment:
| Q |
100 |
ggatccagtgcacaataatgtgaaatctccaatacacatagctcctttgtccattgcatttattgtgtacccaaactttgatgctccagcttgtgccagg |
199 |
Q |
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||||||||||||||||||||| | |||||||||| | |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
7193051 |
ggatccagtgcacaataatgtaagatctccaatatatatagttcctttgtcaattgcatttattgtgtaccctaactttgatgctccagcttgtgctaga |
7193150 |
T |
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| Q |
200 |
cactgaaaactata |
213 |
Q |
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| T |
7193151 |
tactgaaaactata |
7193164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 45390312 - 45390487
Alignment:
| Q |
18 |
aagataataacctcagaagccaaaccatggtgctgaatggcattccactcaagttaacaaatacaggggatattccaacaatggatccagtgcacaataa |
117 |
Q |
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|||||||| |||| | ||| |||||||| |||||||||| | ||| || ||||||||| || || || ||||| | | |||||||||| | |||||| |
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| T |
45390312 |
aagataatgacctaaatagcaaaaccatgttgctgaatggtagtccgctaaagttaacagatgatggagaaattcctaaattggatccagtactcaataa |
45390411 |
T |
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| Q |
118 |
tgtgaaatctccaatacacatagctcctttgtccattgcatttattgtgtacccaaactttgatgctccagcttgt |
193 |
Q |
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| T |
45390412 |
tgtatattcttcgatacacgtagatcctttatccattgcatttattgtataccccaaccttgatgctccaacttgt |
45390487 |
T |
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