View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9826_high_38 (Length: 234)

Name: NF9826_high_38
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9826_high_38
NF9826_high_38
[»] chr2 (25 HSPs)
chr2 (35-225)||(636259-636448)
chr2 (35-225)||(22430325-22430514)
chr2 (35-225)||(22435919-22436108)
chr2 (35-225)||(7909956-7910145)
chr2 (35-225)||(43776968-43777157)
chr2 (35-225)||(14898760-14898949)
chr2 (35-203)||(630730-630897)
chr2 (35-205)||(7917411-7917580)
chr2 (35-203)||(22424977-22425144)
chr2 (35-205)||(14893223-14893396)
chr2 (35-203)||(43771464-43771629)
chr2 (35-203)||(26694152-26694319)
chr2 (35-225)||(1525619-1525814)
chr2 (35-203)||(1519141-1519312)
chr2 (35-126)||(26702324-26702415)
chr2 (104-203)||(19052428-19052526)
chr2 (190-223)||(5836224-5836257)
chr2 (166-222)||(19437659-19437715)
chr2 (193-223)||(17319665-17319695)
chr2 (79-109)||(19052381-19052411)
chr2 (193-222)||(7385002-7385031)
chr2 (193-222)||(16443478-16443507)
chr2 (193-222)||(19912243-19912272)
chr2 (49-109)||(14188410-14188470)
chr2 (166-222)||(24053410-24053466)
[»] chr1 (25 HSPs)
chr1 (35-225)||(27178963-27179152)
chr1 (35-225)||(15716601-15716790)
chr1 (35-206)||(27194964-27195134)
chr1 (35-203)||(26711470-26711637)
chr1 (35-203)||(15711042-15711209)
chr1 (35-203)||(33498412-33498579)
chr1 (73-224)||(33492968-33493118)
chr1 (41-117)||(17721823-17721899)
chr1 (41-167)||(3343872-3344002)
chr1 (114-223)||(17721697-17721805)
chr1 (46-114)||(16498728-16498796)
chr1 (35-77)||(33491517-33491559)
chr1 (104-187)||(16498808-16498889)
chr1 (190-223)||(29547720-29547753)
chr1 (69-117)||(9088672-9088720)
chr1 (166-222)||(18535101-18535157)
chr1 (166-222)||(31093069-31093125)
chr1 (166-222)||(37356855-37356911)
chr1 (179-222)||(11660158-11660201)
chr1 (192-222)||(145538-145568)
chr1 (39-109)||(29644986-29645056)
chr1 (190-223)||(28519255-28519288)
chr1 (190-223)||(38991079-38991112)
chr1 (41-109)||(22575864-22575932)
chr1 (195-223)||(40274587-40274615)
[»] chr3 (25 HSPs)
chr3 (35-226)||(3110502-3110692)
chr3 (35-225)||(13990809-13990998)
chr3 (35-225)||(23344353-23344542)
chr3 (35-225)||(40800631-40800820)
chr3 (36-222)||(2168645-2168830)
chr3 (35-205)||(2174211-2174380)
chr3 (35-203)||(13985259-13985426)
chr3 (35-203)||(23338828-23338995)
chr3 (35-203)||(3112119-3112286)
chr3 (35-203)||(9730306-9730473)
chr3 (35-203)||(40802555-40802722)
chr3 (35-203)||(48216329-48216496)
chr3 (35-223)||(13980649-13980836)
chr3 (88-225)||(9724670-9724805)
chr3 (42-203)||(13991988-13992148)
chr3 (35-146)||(34578810-34578921)
chr3 (35-91)||(9721556-9721612)
chr3 (179-223)||(2978370-2978414)
chr3 (166-222)||(49486846-49486902)
chr3 (179-222)||(21477473-21477516)
chr3 (104-206)||(20454614-20454715)
chr3 (193-223)||(44122179-44122209)
chr3 (44-109)||(19307722-19307787)
chr3 (166-222)||(15752621-15752677)
chr3 (190-222)||(21883405-21883437)
[»] chr8 (13 HSPs)
chr8 (35-225)||(12756155-12756344)
chr8 (35-203)||(24052027-24052194)
chr8 (35-203)||(41043478-41043645)
chr8 (35-225)||(41048836-41049018)
chr8 (192-223)||(23429513-23429544)
chr8 (179-222)||(30714350-30714393)
chr8 (179-222)||(30722127-30722170)
chr8 (35-109)||(2232107-2232180)
chr8 (73-103)||(24042894-24042924)
chr8 (190-223)||(21247656-21247689)
chr8 (190-223)||(27679770-27679803)
chr8 (190-223)||(37209692-37209725)
chr8 (166-222)||(26196877-26196933)
[»] chr6 (11 HSPs)
chr6 (35-225)||(14855914-14856103)
chr6 (35-203)||(14847078-14847245)
chr6 (35-204)||(26680569-26680736)
chr6 (115-220)||(6933022-6933126)
chr6 (41-113)||(10345722-10345793)
chr6 (190-222)||(19441313-19441345)
chr6 (172-203)||(10345872-10345903)
chr6 (149-203)||(6924849-6924902)
chr6 (193-222)||(17270338-17270367)
chr6 (190-223)||(23427462-23427495)
chr6 (41-109)||(31023400-31023468)
[»] chr5 (18 HSPs)
chr5 (35-225)||(28366974-28367163)
chr5 (35-203)||(28375714-28375881)
chr5 (35-204)||(30963167-30963333)
chr5 (35-203)||(1536548-1536715)
chr5 (35-151)||(30927376-30927490)
chr5 (41-223)||(34647933-34648110)
chr5 (147-225)||(30957702-30957779)
chr5 (166-223)||(25365516-25365573)
chr5 (35-113)||(14663991-14664064)
chr5 (166-222)||(23053501-23053557)
chr5 (166-222)||(35264662-35264718)
chr5 (179-222)||(21171322-21171365)
chr5 (156-206)||(14664069-14664118)
chr5 (35-109)||(23775275-23775349)
chr5 (35-109)||(23862229-23862303)
chr5 (42-107)||(54437-54502)
chr5 (190-222)||(16675545-16675577)
chr5 (195-223)||(19780180-19780208)
[»] chr7 (20 HSPs)
chr7 (35-222)||(16648403-16648589)
chr7 (35-222)||(17622764-17622950)
chr7 (35-225)||(32148454-32148643)
chr7 (35-221)||(42208874-42209065)
chr7 (35-223)||(557865-558052)
chr7 (33-203)||(44655598-44655767)
chr7 (35-204)||(42167614-42167782)
chr7 (35-203)||(576048-576215)
chr7 (35-223)||(25499033-25499242)
chr7 (73-223)||(26456877-26457027)
chr7 (35-125)||(25493915-25494005)
chr7 (35-203)||(38011682-38011845)
chr7 (171-224)||(42162383-42162436)
chr7 (42-113)||(11726483-11726553)
chr7 (166-222)||(8248091-8248147)
chr7 (192-223)||(20125246-20125277)
chr7 (128-203)||(25493816-25493890)
chr7 (193-222)||(7578499-7578528)
chr7 (190-222)||(340439-340471)
chr7 (82-138)||(30027341-30027397)
[»] chr4 (18 HSPs)
chr4 (35-222)||(20192585-20192771)
chr4 (35-225)||(6162225-6162414)
chr4 (35-203)||(6156550-6156717)
chr4 (35-224)||(53982073-53982260)
chr4 (35-203)||(20197949-20198116)
chr4 (46-106)||(12733922-12733982)
chr4 (166-222)||(1874114-1874170)
chr4 (166-222)||(12659313-12659369)
chr4 (166-222)||(16325840-16325896)
chr4 (166-222)||(30673821-30673877)
chr4 (172-223)||(19582015-19582066)
chr4 (190-223)||(12435492-12435525)
chr4 (190-223)||(29333617-29333650)
chr4 (190-223)||(42411087-42411120)
chr4 (195-223)||(20275846-20275874)
chr4 (166-222)||(23200507-23200563)
chr4 (166-218)||(25687680-25687732)
chr4 (195-223)||(26997134-26997162)
[»] scaffold0004 (2 HSPs)
scaffold0004 (38-225)||(345667-345853)
scaffold0004 (35-203)||(350985-351152)
[»] scaffold0211 (1 HSPs)
scaffold0211 (35-203)||(26903-27070)
[»] scaffold0169 (2 HSPs)
scaffold0169 (35-168)||(10991-11124)
scaffold0169 (69-204)||(8694-8828)
[»] scaffold0121 (2 HSPs)
scaffold0121 (35-125)||(11419-11509)
scaffold0121 (128-203)||(11534-11608)
[»] scaffold0124 (2 HSPs)
scaffold0124 (35-125)||(39540-39630)
scaffold0124 (104-223)||(39422-39539)
[»] scaffold0102 (1 HSPs)
scaffold0102 (166-222)||(14006-14062)
[»] scaffold0014 (1 HSPs)
scaffold0014 (166-222)||(111856-111912)
[»] scaffold0066 (1 HSPs)
scaffold0066 (190-223)||(11574-11607)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 636448 - 636259
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  636448 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 636349  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  636348 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 636259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 22430514 - 22430325
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22430514 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 22430415  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22430414 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 22430325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 22436108 - 22435919
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22436108 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 22436009  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22436008 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 22435919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 7909956 - 7910145
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7909956 aaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 7910055  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7910056 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 7910145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 43777157 - 43776968
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43777157 aaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 43777058  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43777057 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 43776968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 14898949 - 14898760
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |    
T  14898949 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgatttagggagcaagcacaatatggtc 14898850  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  14898849 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacctgtaatattcataacactcccccttggatgtccatctc 14898760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 630897 - 630730
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  630897 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 630798  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  630797 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataaca 630730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 7917411 - 7917580
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7917411 aaagaagattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 7917510  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacact 205  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  7917511 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataacact 7917580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 22425144 - 22424977
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22425144 aaagaggattatattattctcttgtgatgtataattgggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 22425045  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  22425044 caataagctaacaatatgatccaataaccc-atttgctatatggacatccacttgtaatattcataaca 22424977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 14893396 - 14893223
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcac----agtat 130  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||    
T  14893396 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaataaatat 14893297  T
Q  131 ggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacact 205  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  14893296 ggcccaataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacact 14893223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 43771629 - 43771464
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43771629 aaagatgattatattattctcttgtgatgtataattaggtta--tatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 43771532  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||||||||    
T  43771531 caataagctaacaatatgatctaataacccaa-ttgctatatggacatccacttgtaatattcataaca 43771464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 26694319 - 26694152
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||      
T  26694319 aaagaagattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaataaggtt 26694220  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||| |||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  26694219 caataaactaacagtatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 26694152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 1525814 - 1525619
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttata------gagaaatacaatgacttggggagcaagcacagt 128  Q
    |||||||||||||||||| | |||  || | || |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||| |    
T  1525814 aaagaggattatattatttttttggtatctctaattaggttacatatgagctctatttatatttatagagaaatacaatgacttggggagcaagcacaat 1525715  T
Q  129 atggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    ||| || |||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  1525714 atgacctaataagctaacagtatgatccaataacccaa-tttctatatggacatccacttataatattcataacactcccccttggatgtccatctc 1525619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 1519312 - 1519141
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaataca----atgacttggggagcaagcacagtat 130  Q
    ||||||||||||||||||||||||  || | || |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| |||    
T  1519312 aaagaggattatattattctcttggtatctctaattaggttacatatgagctctatttatagagaaatacaatgaatgacttggggagcaagcacaatat 1519213  T
Q  131 ggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    | ||||||||||||||||||| ||||||||| |||| || ||||||| | |||||||| ||||||||||||||    
T  1519212 gacccaataagctaacaatataatccaataatccaa-ttgctatatggatatccacttataatattcataaca 1519141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 26702415 - 26702324
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcaca 126  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26702415 aaagaagattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcaca 26702324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 19052428 - 19052526
Alignment:
Q  104 caatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||||||||||| ||| | |||||||||||| | |||||  ||||||| ||| || ||||||| | || ||||| |||||| |||||||    
T  19052428 caatgacttggggagcaagcacaatatcgtccaataagctaatagtatgactcaataactcaa-ttgctatatggatattcacttataatatccataaca 19052526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 5836224 - 5836257
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||||||||||||||||||||||||||||||    
T  5836224 taatattcataacactcccccttggatgtccatc 5836257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 19437659 - 19437715
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  19437659 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 19437715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 17319665 - 17319695
Alignment:
Q  193 tattcataacactcccccttggatgtccatc 223  Q
    |||||||||||||||||||||||||||||||    
T  17319665 tattcataacactcccccttggatgtccatc 17319695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 19052381 - 19052411
Alignment:
Q  79 tatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||||||||||||||||||||||    
T  19052381 tatgagctctatttatagagaaatacaatga 19052411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 7385002 - 7385031
Alignment:
Q  193 tattcataacactcccccttggatgtccat 222  Q
    ||||||||||||||||||||||||||||||    
T  7385002 tattcataacactcccccttggatgtccat 7385031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 16443478 - 16443507
Alignment:
Q  193 tattcataacactcccccttggatgtccat 222  Q
    ||||||||||||||||||||||||||||||    
T  16443478 tattcataacactcccccttggatgtccat 16443507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 19912272 - 19912243
Alignment:
Q  193 tattcataacactcccccttggatgtccat 222  Q
    ||||||||||||||||||||||||||||||    
T  19912272 tattcataacactcccccttggatgtccat 19912243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 14188470 - 14188410
Alignment:
Q  49 tattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||| |||| | ||| ||||||| ||  |||||||||||||||| ||||||||    
T  14188470 tattctcttgtggtgtacaattatgttacatgtggtctctatttatagagaagtacaatga 14188410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 24053410 - 24053466
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| ||||||||||||||| |||||||||    
T  24053410 atttgctatttggacatccactattaatatttataacactcccccttagatgtccat 24053466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 27178963 - 27179152
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27178963 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 27179062  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27179063 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 27179152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 15716790 - 15716601
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15716790 aaagaagattatattattctcttgtgatgtataattacgttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 15716691  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  15716690 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgttcatctc 15716601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 27194964 - 27195134
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27194964 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 27195063  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactc 206  Q
    |||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||||||||||||||    
T  27195064 caataagctaacaatatgatccaataacccaattgt-tatatagacatccacttgtaatattcataacactc 27195134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 26711470 - 26711637
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26711470 aaagaggattatattattctcttgtgatgtctaattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 26711569  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  26711570 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 26711637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 15711209 - 15711042
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |    
T  15711209 aaagaagattatattattctcttgtgatgtataattacgttacatatgagctctatttataaagaaatacaatgacttggggagcaagcacaatatggtc 15711110  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  15711109 caataaactaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 15711042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 33498412 - 33498579
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||    
T  33498412 aaagaggattatattattctcttgtgatgtataattaggttacatataagctccatttatagagaaatacaatgacttggggagcaagcacaatatagcc 33498511  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||| |||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||    
T  33498512 caataagctaaaaatatgatccaacaacccaa-ttgctatatggacatccacttgtaatattcataaca 33498579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 33492968 - 33493118
Alignment:
Q  73 gttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttct 172  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||| || ||    
T  33492968 gttacatataagctctatttatagagaaatacaatgacttagggagcaagcacaatatagcccaataagctaacaatatgatccaacaactcaa-ttgct 33493066  T
Q  173 atatgaacatccacttgtaatattcataacactcccccttggatgtccatct 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33493067 atatggacatccacttgtaatattcataacactcccccttggatgtccatct 33493118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 17721899 - 17721823
Alignment:
Q  41 gattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttgggga 117  Q
    ||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  17721899 gattatattattctcttgtgatgtacaattaggttacatacgagctctatttatagagaaatataatgacttgggga 17721823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 3343872 - 3344002
Alignment:
Q  41 gattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttg----gggagcaagcacagtatggccca 136  Q
    |||| ||||||| |||||| || |||| ||||||||||||| || |||||||||| |||||||||||||||||    || |||||||||| |||| ||||    
T  3343872 gattctattattttcttgttatatataattaggttacatataagttctatttatatagaaatacaatgacttgggaaggaagcaagcacaatatgaccca 3343971  T
Q  137 ataagctaacaatatgatccaataacccaat 167  Q
    ||||||||| | ||| | |||||||||||||    
T  3343972 ataagctaatagtataacccaataacccaat 3344002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 17721805 - 17721697
Alignment:
Q  114 gggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttg 213  Q
    |||||||| |||| ||| |||||||||||||  | ||||| ||||||||| |||| | || ||| |||||||||| ||||||||||||||||||||||||    
T  17721805 gggagcaaacacaatatagcccaataagctagtagtatgacccaataaccaaattct-tacatggacatccacttataatattcataacactcccccttg 17721707  T
Q  214 gatgtccatc 223  Q
     |||||||||    
T  17721706 aatgtccatc 17721697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 16498728 - 16498796
Alignment:
Q  46 tattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttgg 114  Q
    ||||||||||||||| | |  | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  16498728 tattattctcttgtggtatgcaattaggttacatatgagctctatttatagagagatacaatgacttgg 16498796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 33491517 - 33491559
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttac 77  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  33491517 aaagaggattatattattctcttgtgatgtataattaggttac 33491559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 16498808 - 16498889
Alignment:
Q  104 caatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccact 187  Q
    |||||||||||| |||||||||| |||||||||||||||||| | ||| | | |||||||||| || ||||||| |||||||||    
T  16498808 caatgacttggg-agcaagcacaatatggcccaataagctaatagtataacctaataacccaa-ttgctatatggacatccact 16498889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 29547753 - 29547720
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||||||||||||||||||||||||||||||    
T  29547753 taatattcataacactcccccttggatgtccatc 29547720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 9088720 - 9088672
Alignment:
Q  69 ttaggttacatatgagctctatttatagagaaatacaatgacttgggga 117  Q
    |||| |||||||| ||||||||||||||||||||| ||||| |||||||    
T  9088720 ttagattacatataagctctatttatagagaaatataatgatttgggga 9088672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 18535101 - 18535157
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  18535101 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 18535157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 31093069 - 31093125
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  31093069 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 31093125  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 37356855 - 37356911
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  37356855 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 37356911  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 11660201 - 11660158
Alignment:
Q  179 acatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  11660201 acatccactattaatatttataacactcccccttggatgtccat 11660158  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 145538 - 145568
Alignment:
Q  192 atattcataacactcccccttggatgtccat 222  Q
    |||||||||||||||||||||||||||||||    
T  145538 atattcataacactcccccttggatgtccat 145568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 29645056 - 29644986
Alignment:
Q  39 aggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||||  | |||||||||||| ||| ||||||| |||  | ||||||||||||| ||||||||    
T  29645056 aggattatattatcgttttgtgatgtataattatgttacatgtgatttttatttatagagaagtacaatga 29644986  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 28519288 - 28519255
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  28519288 taatatttataacactcccccttggatgtccatc 28519255  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 38991112 - 38991079
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  38991112 taatatttataacactcccccttggatgtccatc 38991079  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 22575864 - 22575932
Alignment:
Q  41 gattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||||||||||  |||  | ||| ||||||| ||  |||||||||||||||| ||||||||    
T  22575864 gattatattattctcttgtagtgttcaattatgttacatgtggtctctatttatagagaagtacaatga 22575932  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 40274587 - 40274615
Alignment:
Q  195 ttcataacactcccccttggatgtccatc 223  Q
    |||||||||||||||||||||||||||||    
T  40274587 ttcataacactcccccttggatgtccatc 40274615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 3110502 - 3110692
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3110502 aaagaggattatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 3110601  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctca 226  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110602 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctca 3110692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 13990998 - 13990809
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  13990998 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacacaatatggcc 13990899  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13990898 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 13990809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 23344542 - 23344353
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23344542 aaagaggattatattattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 23344443  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23344442 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 23344353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 40800631 - 40800820
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40800631 aaagatgattatattattctcttgttatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 40800730  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40800731 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 40800820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 2168645 - 2168830
Alignment:
Q  36 aagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggccc 135  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  2168645 aagaggattatattattctcttgtgatgtataattaggctacatatgagctctatttatagagaaatacaatgacttggggagcaaacacaatatggccc 2168744  T
Q  136 aataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2168745 aataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccat 2168830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 2174211 - 2174380
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2174211 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaacacaatatggcc 2174310  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacact 205  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||||    
T  2174311 caataagctaacaatatgatccaataacccaa-ttgctatatggacatacacttgtaatattcataacact 2174380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 13985426 - 13985259
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  13985426 aaagaggattatattattctcttgtgatgtataattaggttacatatgatctctatttatagagaaatacaatgacttggggagcaaacacaatatggcc 13985327  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  13985326 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 13985259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 23338995 - 23338828
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23338995 aaagaggattatattattctcttgtgatctataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 23338896  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||||||||||    
T  23338895 caataagctaacaatatgatccaataatccaa-ttgctatatggacatccacttgtaatattcataaca 23338828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 3112119 - 3112286
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3112119 aaagaggattatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 3112218  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||  ||||||||| || ||||||| |||||||||||||||||||||||||    
T  3112219 caataagctaacaatatgatcttataacccaa-ttgctatatggacatccacttgtaatattcataaca 3112286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 9730306 - 9730473
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  9730306 aaagaggattatattattctcttgtcatgtataattagattacatatgagctctatttatagagaaatacaatgatttggggagcaagcacaatatggcc 9730405  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  9730406 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 9730473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 40802555 - 40802722
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||    
T  40802555 aaagatgattatattattctcttgtgatgtataattaagttacatatgagctctatttatagagaaatacaatgacttgggaagcaagcacaatatcgcc 40802654  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||    
T  40802655 caataagctaacaatatgatccaataactcaa-ttgctatatggacatccacttgtaatattcataaca 40802722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 48216329 - 48216496
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||    
T  48216329 aaagatgattatattattctcttgtgatatataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaaccaaaatatggcc 48216428  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  48216429 caataagctgacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 48216496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 13980649 - 13980836
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||  ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13980649 aaagatgattatattattctcttggtatgtacaattagattacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 13980748  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatc 223  Q
    ||||||||||| | ||||| |||||||||||| || ||||||  |||||||||| |||||||||||||||||  |||||||||||||||    
T  13980749 caataagctaatagtatgacccaataacccaa-ttcctatatagacatccacttataatattcataacactcttccttggatgtccatc 13980836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 9724670 - 9724805
Alignment:
Q  88 tatttatagagaaatacaatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccact 187  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||  ||||||| |||||||||    
T  9724670 tatttatagagaaatacaatgacttggggagcaagcacaatatggccaaa-aagctaacaatatgatccaataacccaattg-ctatatggacatccact 9724767  T
Q  188 tgtaatattcataacactcccccttggatgtccatctc 225  Q
     |||||||||||||||||||||||||||||||||||||    
T  9724768 agtaatattcataacactcccccttggatgtccatctc 9724805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 13991988 - 13992148
Alignment:
Q  42 attatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaataag 141  Q
    |||||||||||||||||  ||||||| ||||||| ||||||||||||||||||| | ||| |||||||||||  ||||||||||| |||| |||||||||    
T  13991988 attatattattctcttgatatgtataattaggttgcatatgagctctatttatacataaacacaatgacttgaagagcaagcacaatatgacccaataag 13992087  T
Q  142 ctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||| | ||||| |||||||||||| || ||||||  |||||||||| ||||||||||||||    
T  13992088 ctaatagtatgacccaataacccaa-ttgctatatagacatccacttataatattcataaca 13992148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 34578810 - 34578921
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| |||||||||||||||||   ||   || ||||||||||||| |||||||||||||||||||||||||||||||||||  ||| ||| ||||  |    
T  34578810 aaagatgattatattattctcttagtatcactaattaggttacatataagctctatttatagagaaatacaatgacttggggaataagtacaatatgatc 34578909  T
Q  135 caataagctaac 146  Q
    ||||||||||||    
T  34578910 caataagctaac 34578921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 9721556 - 9721612
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatt 91  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||| ||||    
T  9721556 aaagaggattatattattctcttgtgatgtataattagagtacatatgagctttatt 9721612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 2978370 - 2978414
Alignment:
Q  179 acatccacttgtaatattcataacactcccccttggatgtccatc 223  Q
    |||||||||  ||||||| ||||||||||||||||||||||||||    
T  2978370 acatccactattaatatttataacactcccccttggatgtccatc 2978414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 49486846 - 49486902
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  49486846 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 49486902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 21477516 - 21477473
Alignment:
Q  179 acatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  21477516 acatccactattaatatttataacactcccccttggatgtccat 21477473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 20454715 - 20454614
Alignment:
Q  104 caatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||| |||||| || |||||||| |||  | ||||||  ||| | |||||||||||||||||| || ||||||| |||||||||| |||||||  |||||    
T  20454715 caataacttggagatcaagcacaatataacacaataaattaatagtatgatccaataacccaa-ttgctatatggacatccacttataatatttgtaaca 20454617  T
Q  204 ctc 206  Q
    |||    
T  20454616 ctc 20454614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 44122179 - 44122209
Alignment:
Q  193 tattcataacactcccccttggatgtccatc 223  Q
    |||||||||||||||||||||||||||||||    
T  44122179 tattcataacactcccccttggatgtccatc 44122209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 19307722 - 19307787
Alignment:
Q  44 tatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||| |  |||||  | ||| ||||||| ||| |||||||||||||||||||||||||    
T  19307722 tatattattctccttggatgtcaagttatgttacatgtgatctctatttatagagaaatacaatga 19307787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 15752621 - 15752677
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||| ||||||||||||||||||    
T  15752621 atttgctatttggacatccactattaatatttataacattcccccttggatgtccat 15752677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 21883437 - 21883405
Alignment:
Q  190 taatattcataacactcccccttggatgtccat 222  Q
    ||||||| |||||||||||||||||||||||||    
T  21883437 taatatttataacactcccccttggatgtccat 21883405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 12756155 - 12756344
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12756155 aaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 12756254  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12756255 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 12756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 24052027 - 24052194
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24052027 aaagaagattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 24052126  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||| ||||||||||||||||||||| ||||| | |||||| ||||||| |||||||||||||||||    
T  24052127 caataaactaacaatatgatccaataactcaattgt-tatatggacatccatttgtaatattcataaca 24052194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 41043645 - 41043478
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||    
T  41043645 aaagaggattatgctattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagtaagcacaataaagcc 41043546  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||| || ||||||  |||||||||||||||||||||||||    
T  41043545 caataagctaacaatatgatccaataacccaa-ttgctatatagacatccacttgtaatattcataaca 41043478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 41049018 - 41048836
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| || | || | ||    
T  41049018 aaagaagattatgttattatcttgtgatgtataattaggttacatatgagctctatttataaataaatacaatgacttggggagcaaacataataagacc 41048919  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||       ||| |||||| ||| || ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  41048918 caataagctaa-------atcaaataactcaa-ttgctatatggacatccacttgtaatattcataacacttccccttggatgcccatctc 41048836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 23429544 - 23429513
Alignment:
Q  192 atattcataacactcccccttggatgtccatc 223  Q
    ||||||||||||||||||||||||||||||||    
T  23429544 atattcataacactcccccttggatgtccatc 23429513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 30714350 - 30714393
Alignment:
Q  179 acatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  30714350 acatccactattaatatttataacactcccccttggatgtccat 30714393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 30722127 - 30722170
Alignment:
Q  179 acatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  30722127 acatccactattaatatttataacactcccccttggatgtccat 30722170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 2232180 - 2232107
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||||||||| ||||||| |||| |  || ||||||||||| || ||||||||||||| || |||||    
T  2232180 aaagaggattatattattatcttgtggtgtaca-atatgttacatatgatctatatttatagagaagtataatga 2232107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 103
Target Start/End: Original strand, 24042894 - 24042924
Alignment:
Q  73 gttacatatgagctctatttatagagaaata 103  Q
    |||||||||||||||||||||||||||||||    
T  24042894 gttacatatgagctctatttatagagaaata 24042924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 21247689 - 21247656
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  21247689 taatatttataacactcccccttggatgtccatc 21247656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 27679770 - 27679803
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  27679770 taatatttataacactcccccttggatgtccatc 27679803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 37209725 - 37209692
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  37209725 taatatttataacactcccccttggatgtccatc 37209692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 26196933 - 26196877
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| ||||||||||||  ||||||| ||||||| |||||||| ||||||||    
T  26196933 atttgctatttgaacatccactattaatatttataacacccccccttgaatgtccat 26196877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 14856103 - 14855914
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  14856103 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacgtggggagcaagcacaatatggcc 14856004  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    ||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14856003 caatatgctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 14855914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 14847245 - 14847078
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  14847245 aaagaagattatattattctcttgtgatgtataattaggttacatatgagttctatttatagagaaatacaatgacgtggggagcaatcacaatatggcc 14847146  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||||||||| |||||||||| || ||||||| | |||||||||||||||||||||||    
T  14847145 caataagctaacaatatgatcaaataacccaa-ttgctatatggatatccacttgtaatattcataaca 14847078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 26680736 - 26680569
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  26680736 aaagaggattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt-gggagcaagcacaataaggcc 26680638  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacac 204  Q
    |||||| |||||| ||||||| || ||| ||| || ||| ||| ||||||||||||||||||||||||||    
T  26680637 caataaactaacagtatgatcaaaaaactcaa-ttgctacatggacatccacttgtaatattcataacac 26680569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 6933126 - 6933022
Alignment:
Q  115 ggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttgg 214  Q
    ||||||| |||| ||| | |||||||||||||| ||||| ||||||||||||||  ||||||| |||||||||| |||||||||||||||  | ||||||    
T  6933126 ggagcaaacacaatatagtccaataagctaacagtatgacccaataacccaattg-ctatatggacatccacttataatattcataacacagctccttgg 6933028  T
Q  215 atgtcc 220  Q
    ||||||    
T  6933027 atgtcc 6933022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 10345722 - 10345793
Alignment:
Q  41 gattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttg 113  Q
    |||||||||||||||||||| |||  ||| || |||||| ||| ||||||||||| ||||||| |||||||||    
T  10345722 gattatattattctcttgtgttgtcaattaag-ttacatgtgaactctatttatatagaaatagaatgacttg 10345793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 19441313 - 19441345
Alignment:
Q  190 taatattcataacactcccccttggatgtccat 222  Q
    |||||||||||||||||||||||||||||||||    
T  19441313 taatattcataacactcccccttggatgtccat 19441345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 203
Target Start/End: Original strand, 10345872 - 10345903
Alignment:
Q  172 tatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||||||||||||||||||||    
T  10345872 tatatgaacatccacttgtaatattcataaca 10345903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 6924902 - 6924849
Alignment:
Q  149 tatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||||||||  ||||||  |||||||||| ||||||||||||||    
T  6924902 tatgatccaataacccaattg-ctatatcgacatccacttataatattcataaca 6924849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 17270338 - 17270367
Alignment:
Q  193 tattcataacactcccccttggatgtccat 222  Q
    ||||||||||||||||||||||||||||||    
T  17270338 tattcataacactcccccttggatgtccat 17270367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 23427495 - 23427462
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  23427495 taatatttataacactcccccttggatgtccatc 23427462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 31023468 - 31023400
Alignment:
Q  41 gattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    |||||||||||| || |||||| || | ||| ||||||| ||| ||||||||||| |||| ||||||||    
T  31023468 gattatattattttcatgtgatatacaattatgttacatgtgatctctatttatatagaactacaatga 31023400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 28366974 - 28367163
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28366974 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 28367073  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||||||||||||||||||||||||| ||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  28367074 caataagctaacaatatgatccaataactcaa-ttgctatattgacatccacttgtaatattcataacactcccccttggatgtccatctc 28367163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 28375714 - 28375881
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28375714 aaagaagattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 28375813  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||    
T  28375814 caataagctaacaatatgatccaataactcaa-ttgctatatggacatccacttgtaatattcataaca 28375881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 30963167 - 30963333
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  30963167 aaagatgattatattattctcttgtgatgtataattaagtta--tatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggtc 30963264  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacac 204  Q
    |||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||||||    
T  30963265 caataagctaacaatatgatccaataacccaattgt-tatatggacatccacttataatattcataacac 30963333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 1536548 - 1536715
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||  || | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1536548 aaagaggattatattattctcttggtatctctaattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 1536647  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||| |||||||||||||||||| || ||||||| |||||||||| ||||||| ||||||    
T  1536648 caataagctaacagtatgatccaataacccaa-ttgctatatggacatccacttataatatttataaca 1536715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 35 - 151
Target Start/End: Original strand, 30927376 - 30927490
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| |||||||||||||| |||||||||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  30927376 aaagatgattatattattcttttgtgatgtataattaagtta--tatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggtc 30927473  T
Q  135 caataagctaacaatat 151  Q
    |||||||||||||||||    
T  30927474 caataagctaacaatat 30927490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 34647933 - 34648110
Alignment:
Q  41 gattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaataa 140  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||| ||           
T  34647933 gattctattattctcttgtgatgtacaattaggttacatatgagctcaatttatacagaaatacaatgatttggggagcaagcacaatatagc------- 34648025  T
Q  141 gctaacaatatgatccaataacccaattttctatatgaa----catccacttgtaatattcataacactcccccttggatgtccatc 223  Q
     |||| | ||| | |||||||||||| || ||||||| |    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  34648026 -ctaatagtataacccaataacccaa-ttgctatatggacatccatccacttataatattcataactctcccccttggatgtccatc 34648110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 30957702 - 30957779
Alignment:
Q  147 aatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30957702 aatatgatccaataacccaattg-ctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 30957779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 25365516 - 25365573
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatc 223  Q
    |||| |||| ||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  25365516 atttgctatttgaacatccactattaatatttataacactcccccttggatgtccatc 25365573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 113
Target Start/End: Original strand, 14663991 - 14664064
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttg 113  Q
    ||||| ||||||||||||||||||  || | || |||||||     |||||||||||||||||||||||||||||||||    
T  14663991 aaagaagattatattattctcttggtatctctaattaggtt-----tgagctctatttatagagaaatacaatgacttg 14664064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 23053501 - 23053557
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  23053501 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 23053557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 35264662 - 35264718
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  35264662 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 35264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 21171322 - 21171365
Alignment:
Q  179 acatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||  ||||||| |||||||||||||||||||||||||    
T  21171322 acatccactattaatatttataacactcccccttggatgtccat 21171365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 14664069 - 14664118
Alignment:
Q  156 caataacccaattttctatatgaacatccacttgtaatattcataacactc 206  Q
    |||||||||||||  ||||||| |||||||||| |||||||||||||||||    
T  14664069 caataacccaattg-ctatatggacatccacttataatattcataacactc 14664118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 23775349 - 23775275
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    ||||| |||| || ||||||||| ||||||| | |||  |||||| ||| |||||||||||||||| ||||||||    
T  23775349 aaagatgattttaatattctcttctgatgtacaattatcttacatgtgatctctatttatagagaagtacaatga 23775275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 23862303 - 23862229
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatga 109  Q
    ||||| |||| || ||||||||| ||||||| | |||  |||||| ||| |||||||||||||||| ||||||||    
T  23862303 aaagatgattttaatattctcttctgatgtacaattatcttacatgtgatctctatttatagagaagtacaatga 23862229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 54437 - 54502
Alignment:
Q  42 attatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaat 107  Q
    |||||||||||| |||||| |||| | ||  ||||||| ||| ||||||||||| |||||||||||    
T  54437 attatattattcacttgtgttgtacaattgtgttacatgtgaactctatttatatagaaatacaat 54502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 16675577 - 16675545
Alignment:
Q  190 taatattcataacactcccccttggatgtccat 222  Q
    ||||||| |||||||||||||||||||||||||    
T  16675577 taatatttataacactcccccttggatgtccat 16675545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 19780180 - 19780208
Alignment:
Q  195 ttcataacactcccccttggatgtccatc 223  Q
    |||||||||||||||||||||||||||||    
T  19780180 ttcataacactcccccttggatgtccatc 19780208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 16648589 - 16648403
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16648589 aaagaggattatatttttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 16648490  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  16648489 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacattcccccttggatgtccat 16648403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 17622950 - 17622764
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17622950 aaagaggattatatttttctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 17622851  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  17622850 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacattcccccttggatgtccat 17622764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 32148643 - 32148454
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  32148643 aaagaggattatattattttcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttgggagcaagcacaatatggcc 32148544  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||| ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32148543 caataaactaacaatatgatccaataacccaattgt-tatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 32148454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 42209065 - 42208874
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatattta------ggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagt 128  Q
    ||||| ||||||||||||||||||||||||||| |||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42209065 aaagatgattatattattctcttgtgatgtataattataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaat 42208966  T
Q  129 atggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtcca 221  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42208965 atggtccaataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtcca 42208874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 557865 - 558052
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  557865 aaagaggattatattattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatgacttgggaagcaagcacaatatggcc 557964  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatc 223  Q
    ||||||||||| | ||||| ||||||||| |||| | |||||  |||||||||| ||||||||||||||||||||||||||||||||||    
T  557965 caataagctaatagtatgacccaataaccgaattgt-tatatagacatccacttataatattcataacactcccccttggatgtccatc 558052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 44655767 - 44655598
Alignment:
Q  33 ataaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatgg 132  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||||| ||||||||||  | |     
T  44655767 ataaagaggattatattattctcttgtgatgtataattaggttacatatgagcttaatttatagagaaatacaaagacttgggtagcaagcacaacaaga 44655668  T
Q  133 cccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  44655667 cccaataagctaacagtatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 44655598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 42167614 - 42167782
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  42167614 aaagaggattatgttattttcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaataaggcc 42167713  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacac 204  Q
    |||||| |||||| ||||||| |||||| ||| || ||||||| ||||||||| ||||||||||||||||    
T  42167714 caataaactaacagtatgatcaaataactcaa-ttgctatatggacatccactggtaatattcataacac 42167782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 576048 - 576215
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  576048 aaagaggattatattattctcttgtgatgtacaattaggttacatatgaactctatttatagagaaatacaatgacttgggaagcaatcacaatatggcc 576147  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||||| | ||||| ||||||||| |||| | |||||  |||||||||| ||||||||||||||    
T  576148 caataagctaatagtatgacccaataaccgaattgt-tatatagacatccacttataatattcataaca 576215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 25499242 - 25499033
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagca---------- 124  Q
    |||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  25499242 aaagaggaatatattattctcttgtgatgtatcattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcaccaatgactt 25499143  T
Q  125 ------------cagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactccccctt 212  Q
                || ||||| |||||||||||| | ||||| ||||||||| ||||  ||||||| |||||||||| |||||||||||||||||||||||    
T  25499142 agggagcaagcacaatatggtccaataagctaatagtatgacccaataacctaattg-ctatatggacatccacttataatattcataacactccccctt 25499044  T
Q  213 ggatgtccatc 223  Q
    |||||||||||    
T  25499043 ggatgtccatc 25499033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 26456877 - 26457027
Alignment:
Q  73 gttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttct 172  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||| || ||||||||||| | ||| | ||||||| ||||||  ||    
T  26456877 gttacatatgagctctatttatagagaaatacaatgatttggagagcaagcgcaatatagcacaataagctaatagtataacccaataatccaattgcct 26456976  T
Q  173 atatgaacatccacttgtaatattcataacactcccccttggatgtccatc 223  Q
    ||||| |||||||||| |||||||||||||| ||  |||||||||||||||    
T  26456977 atatggacatccacttataatattcataacattcttccttggatgtccatc 26457027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 25494005 - 25493915
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcac 125  Q
    |||||||| |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494005 aaagaggaatatattattctcttgtgatgtatcattatgttacatatgagctctatttatagagaaatacaatgacttggggagcaagcac 25493915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 38011682 - 38011845
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||    || |  | ||||||||||||||||||||||  |||||| |||||||||||||||||| | || | | ||  |||    
T  38011682 aaagaggattatattattctct----atattcaattaggttacatatgagctctatagatagagtaatacaatgacttggggatccagtataataaagcc 38011777  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||| |||| | ||||| | |||||||||||| | |||||| |||||||||| ||||||||||||||    
T  38011778 caataaactaagagtatgacctaataacccaattgt-tatatggacatccacttctaatattcataaca 38011845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 42162383 - 42162436
Alignment:
Q  171 ctatatgaacatccacttgtaatattcataacactcccccttggatgtccatct 224  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  42162383 ctatatggacatccacttgtaatattcataacacttccccttggatgtcaatct 42162436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 11726483 - 11726553
Alignment:
Q  42 attatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttg 113  Q
    |||||||||||||||| || |||  ||  ||||||||| ||||||||||||||||||||||||||| |||||    
T  11726483 attatattattctcttatgttgtcaata-aggttacatgtgagctctatttatagagaaatacaataacttg 11726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 8248147 - 8248091
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  8248147 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 8248091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 20125277 - 20125246
Alignment:
Q  192 atattcataacactcccccttggatgtccatc 223  Q
    ||||||||||||||||||||||||||||||||    
T  20125277 atattcataacactcccccttggatgtccatc 20125246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 25493890 - 25493816
Alignment:
Q  128 tatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||| |||||||||||| | ||||| ||| ||||| || || ||||||| |||||||||| ||||||||||||||    
T  25493890 tatggtccaataagctaatagtatgacccattaacctaa-ttgctatatggacatccacttataatattcataaca 25493816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 7578528 - 7578499
Alignment:
Q  193 tattcataacactcccccttggatgtccat 222  Q
    ||||||||||||||||||||||||||||||    
T  7578528 tattcataacactcccccttggatgtccat 7578499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 340439 - 340471
Alignment:
Q  190 taatattcataacactcccccttggatgtccat 222  Q
    ||||||| |||||||||||||||||||||||||    
T  340439 taatatttataacactcccccttggatgtccat 340471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 30027341 - 30027397
Alignment:
Q  82 gagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaat 138  Q
    |||||||||||||||| ||||||| ||||||  ||||||| |||| ||||| |||||    
T  30027341 gagctctatttatagaaaaatacagtgactttaggagcaaacacaatatggtccaat 30027397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 20192585 - 20192771
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  20192585 aaagaggattatattattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttgggagcaagcacaatatggcc 20192684  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20192685 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccat 20192771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 6162414 - 6162225
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  6162414 aaagatgattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatgacc 6162315  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    |||||| ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  6162314 caataaactaacaatatgatccaataacccaa-tttctatatggatatccacttgtaatattcataacactcccccttggatgtccatctc 6162225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 6156717 - 6156550
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6156717 aaagaggattatattattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggcc 6156618  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  6156617 caataaactaacaatatgatccaataacccaa-tttctatatgaacattcacttgtaatattcataaca 6156550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 224
Target Start/End: Complemental strand, 53982260 - 53982073
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||    
T  53982260 aaagaggattatgttattctcttgtgatgtataattaggttacatatgagctctatttatagagaaatacaatgactt-gggagcaagcacaataaggcc 53982162  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatct 224  Q
    ||||||||||||| ||||||| |||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53982161 caataagctaacagtatgatcaaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatct 53982073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 20197949 - 20198116
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  20197949 aaagaggattatattattctcttgtgatgtataattaggttacatataagctctatttatagagaaatacaatgactttgggagcaagcacaatatggcc 20198048  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||| ||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||    
T  20198049 caataaactaacaatatgatccaataacccaa-ttgctatatggacatccatttgtaatattcataaca 20198116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 12733922 - 12733982
Alignment:
Q  46 tattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaa 106  Q
    |||||||||||||||||    | ||||||||||| ||||||||||||||||||||||||||    
T  12733922 tattattctcttgtgataaccaattaggttacatgtgagctctatttatagagaaatacaa 12733982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 1874114 - 1874170
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  1874114 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 1874170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 12659313 - 12659369
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  12659313 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 12659369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 16325840 - 16325896
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  16325840 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 16325896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 30673821 - 30673877
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  30673821 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 30673877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 19582066 - 19582015
Alignment:
Q  172 tatatgaacatccacttgtaatattcataacactcccccttggatgtccatc 223  Q
    |||||| |||||||||| ||| |||||||||||||| |||| ||||||||||    
T  19582066 tatatggacatccacttataaaattcataacactcctccttagatgtccatc 19582015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 12435492 - 12435525
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  12435492 taatatttataacactcccccttggatgtccatc 12435525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 29333650 - 29333617
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  29333650 taatatttataacactcccccttggatgtccatc 29333617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 42411120 - 42411087
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  42411120 taatatttataacactcccccttggatgtccatc 42411087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 20275874 - 20275846
Alignment:
Q  195 ttcataacactcccccttggatgtccatc 223  Q
    |||||||||||||||||||||||||||||    
T  20275874 ttcataacactcccccttggatgtccatc 20275846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 23200563 - 23200507
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| ||||||||||||||| |||||||||    
T  23200563 atttgctatttggacatccactattaatatttataacactcccccttagatgtccat 23200507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 25687680 - 25687732
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgt 218  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||    
T  25687680 atttgctatttggacatccactattaatatttataacactcccccttggatgt 25687732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 26997162 - 26997134
Alignment:
Q  195 ttcataacactcccccttggatgtccatc 223  Q
    |||||||||||||||||||||||||||||    
T  26997162 ttcataacactcccccttggatgtccatc 26997134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 345667 - 345853
Alignment:
Q  38 gaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaa 137  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  345667 gaggattatattattttcttatgatgtataattaggttacatgtgagctctatttatagagaaatacaatgacttggggagtaagcacaatatggcccaa 345766  T
Q  138 taagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataacactcccccttggatgtccatctc 225  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  345767 taagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataacactcccccttggatgtccatctc 345853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 350985 - 351152
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  350985 aaagaggattatattattctcttatgatgtataattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatggac 351084  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  351085 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 351152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 27070 - 26903
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||||||||||||||||||||| | |||| |  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  27070 aaagaggattatattattctctttttatgttttattatgttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatgacc 26971  T
Q  135 caataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    |||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  26970 caataagctaacaatatgatccaataacccaa-ttgctatatggacatccacttgtaatattcataaca 26903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 11124 - 10991
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcc 134  Q
    ||||| ||||||||||||||||||  || |  | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  11124 aaagatgattatattattctcttggtatatccaattaggttatatatgagctctatttatagagaaatacaatgacttggggagcaagcacaatatgacc 11025  T
Q  135 caataagctaacaatatgatccaataacccaatt 168  Q
    ||||||||||| | ||||| ||||||||||||||    
T  11024 caataagctaatagtatgacccaataacccaatt 10991  T

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Target: scaffold0169; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 8828 - 8694
Alignment:
Q  69 ttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaatt 168  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||| |||||||||||| |    
T  8828 ttagattacatataatctctatttatagagaaatacaatgacttggggagcaagcacaatatgacccaataagctaatagtatgacccaataacccaa-t 8730  T
Q  169 ttctatatgaacatccacttgtaatattcataacac 204  Q
    | ||||||  |||||||||| |||||||||||||||    
T  8729 tgctatatagacatccacttataatattcataacac 8694  T

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Target: scaffold0121 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 11419 - 11509
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcac 125  Q
    |||||||||||||||||||||||   |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419 aaagaggattatattattctcttagtatgtaccattaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcac 11509  T

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Target: scaffold0121; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 11534 - 11608
Alignment:
Q  128 tatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||| |||||||||||| | ||||| ||||||||| || || |||| || |||||||||| ||||||||||||||    
T  11534 tatggtccaataagctaatagtatgacccaataacctaa-ttgctatgtggacatccacttataatattcataaca 11608  T

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Target: scaffold0124 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 39630 - 39540
Alignment:
Q  35 aaagaggattatattattctcttgtgatgtatatttaggttacatatgagctctatttatagagaaatacaatgacttggggagcaagcac 125  Q
    |||||||||||||||||||||||   |||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39630 aaagaggattatattattctcttagtatgtaccattaggttacatatgagctctatttatagagaaatacaatgacttgaggagcaagcac 39540  T

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Target: scaffold0124; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 39539 - 39422
Alignment:
Q  104 caatgacttggggagcaagcacagtatggcccaataagctaacaatatgatccaataacccaattttctatatgaacatccacttgtaatattcataaca 203  Q
    ||||||||| ||||||||||||| ||||| |||||||||||| | || || ||||||||| |||| | |||||| |||||||||| ||||||||||||||    
T  39539 caatgacttagggagcaagcacaatatggtccaataagctaatagtacgacccaataacctaattgt-tatatggacatccacttataatattcataaca 39441  T
Q  204 ctcccccttggatgtccatc 223  Q
    ||||||||| ||||||||||    
T  39440 ctccccctt-gatgtccatc 39422  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 14062 - 14006
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  14062 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 14006  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 111912 - 111856
Alignment:
Q  166 attttctatatgaacatccacttgtaatattcataacactcccccttggatgtccat 222  Q
    |||| |||| || |||||||||  ||||||| |||||||||||||||||||||||||    
T  111912 atttgctatttggacatccactattaatatttataacactcccccttggatgtccat 111856  T

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Target: scaffold0066 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 11607 - 11574
Alignment:
Q  190 taatattcataacactcccccttggatgtccatc 223  Q
    ||||||||||||||||||| ||||||||||||||    
T  11607 taatattcataacactccctcttggatgtccatc 11574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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