View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_high_7 (Length: 521)
Name: NF9826_high_7
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 47619827 - 47620216
Alignment:
| Q |
19 |
catctaactattgaatactactaaatactaaattaaattgtatatcaaatctactgtatggcttacaagattgacaagattaaaggaaaatagaaatgga |
118 |
Q |
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| T |
47619827 |
catctaactattgaatacta---aatactaaattaaattgtatatcaaatctactgtatggcttacaagattgacaagattaaaggaaaatagaaatgga |
47619923 |
T |
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| Q |
119 |
gagaagaaaaaacatataattgctttatttcgtggatgtttttggggaactttttaatttagttgtgggcacggatgtaa-tattttaattggcttgtgg |
217 |
Q |
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| T |
47619924 |
gagaagaaaaaacatataattgttttatttcgtggatttttttggggaactttttaatttagttgtgggcacggatgtaaatattttaattggcttgtgg |
47620023 |
T |
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| Q |
218 |
gatagatggaactatactgatttaagagctatttttactctttggaaaatgtggttaattatgtatatgctataagagaggttgactcataaatctaatt |
317 |
Q |
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| T |
47620024 |
gatagatggaactatactgatttaagagctatttttactctttggaaaatgtggttaattatgtatatgttataagagaggttgattcataaatctaatt |
47620123 |
T |
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| Q |
318 |
tcttcggattttttatagagatgtgaagtatacctatacctctcttatggttttaaaacattggttcatatatacacacccgatgctcctccaa |
411 |
Q |
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| T |
47620124 |
tctttggattttttatagagatgtgaagtatacctatacctctcttatggttctaaaacatcggttcatacatataca-ccgatgctcctccaa |
47620216 |
T |
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