View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_10 (Length: 432)
Name: NF9826_low_10
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_10 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 51045155 - 51044742
Alignment:
| Q |
18 |
ttgatgttgtattttactgcattattcacttcaaactgcaacaaaggatccaacagcttattgtaattttcaccttcccatgagattaacccacctgctg |
117 |
Q |
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| T |
51045155 |
ttgatgttgtattttactgcattattcacttcaaactgcaacaaaggatccaacagcttattttaattttcaccttcccatgagattaacccacctgctg |
51045056 |
T |
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| Q |
118 |
tattttcattaatcatgttggaaaatgagttgttgctgatgttgtctgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaa |
217 |
Q |
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| T |
51045055 |
tattttcattaatcatgttggaaaatgagttgttgctgatgttgtctgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaa |
51044956 |
T |
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| Q |
218 |
ttgcaatggatcaagatcaaatgttggcttattcattagaagtgcttctgaatattcatgtgaggattctagcattaaagttctttgaggttgaggttga |
317 |
Q |
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| T |
51044955 |
ttgcaatggatcaagatcaaatgttggcttattcattagaagtgcttctgaatattcatgtgaggattctagcattaaagttctttgaggttgaggttga |
51044856 |
T |
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| Q |
318 |
gacatttgacattatcattgatggtttctccttctcttcctttacaagaagagattcattattgatcaagggtctatgtgtagctggatcaatcccatgt |
417 |
Q |
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|||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
51044855 |
gaca-gtggcattatcattgatggtttttccttctcttcctttacaagaagagattcattattgatcaagggtttatgtgtagctggatcaatcccttgt |
51044757 |
T |
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| Q |
418 |
ttcattagtttcttc |
432 |
Q |
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| T |
51044756 |
ttcattagtttcttc |
51044742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 298 - 432
Target Start/End: Original strand, 34626305 - 34626438
Alignment:
| Q |
298 |
ttctttgaggttgaggttgagacatttgacattatcattgatggtttctccttctcttcctttacaagaagagattca---ttattgatcaagggtctat |
394 |
Q |
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| T |
34626305 |
ttctttgaggttgagagtgagacagtgg-cattatcattgatggtttttccttctcttcctttataaga---gattcaatattattgatgaagggtttat |
34626400 |
T |
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| Q |
395 |
gtgtagctggatcaatcccatgtttcattagtttcttc |
432 |
Q |
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| T |
34626401 |
gtgtagctggatcaatcccttgtttcattagtttcttc |
34626438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 34626051 - 34626105
Alignment:
| Q |
164 |
tgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaat |
218 |
Q |
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| T |
34626051 |
tgaagagaagaaatagcttgaattgtttccaaactgattctgttcaaattgtaat |
34626105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 34625874 - 34625922
Alignment:
| Q |
86 |
ttcaccttcccatgagattaacccacctgctgtattttcattaatcatgttg |
137 |
Q |
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| T |
34625874 |
ttcaccttcccatgagattaatccacctgc---attttcattaatcatgttg |
34625922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 39674782 - 39674842
Alignment:
| Q |
364 |
agaagagattcattattgatcaagggtctatgtgtagctggatcaatcccatgtttcatta |
424 |
Q |
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| T |
39674782 |
agaagagattcattattgaggaagggtttatgtgtagctggatcaatcccttgtttcatta |
39674842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 293
Target Start/End: Original strand, 39674669 - 39674711
Alignment:
| Q |
251 |
cattagaagtgcttctgaatattcatgtgaggattctagcatt |
293 |
Q |
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| T |
39674669 |
cattaaaagtgcttctgaatattcctgtgaggattctaacatt |
39674711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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