View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_13 (Length: 407)
Name: NF9826_low_13
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40470147 - 40470416
Alignment:
| Q |
1 |
aagttgaccaaatttcaaaggtcaatgaaactaaggatgataaaaaacaaaagatatgacacagtttcttttccttctttatcaatataattccagtcaa |
100 |
Q |
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| T |
40470147 |
aagttgaccaaatttcaaaggtcaatgaaactaaggatgataaaaaacaaaagatatgacacagtttcttttccttctttatcaatataattccagtcaa |
40470246 |
T |
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| Q |
101 |
ttaattatgacccaaatctagtggagtcttacgtgaatttctcaaaatctcaattaatttactgtcccagtgagtctttaatagacggcattagcattaa |
200 |
Q |
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| T |
40470247 |
ttaattatgacccaaatctagtggagtcttacgtgaacttctcaaaatctcaattaatttactgtcccagtgagtctttaatagacggcattatcattaa |
40470346 |
T |
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| Q |
201 |
ataatccattacttacatcactttgttaaaaatggattcaaattcaatgatgaagaagaattttactaca |
270 |
Q |
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| T |
40470347 |
ataatccattacttacatcactttgttaaaaatggattcaaattcaatgatgaaaaagaattttactaca |
40470416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 267 - 401
Target Start/End: Original strand, 40470562 - 40470694
Alignment:
| Q |
267 |
tacaagctagtgacaatgaataacccgtgtatgaggatattagattttggacactgattttatgtcctcctcaatcctcatcatcactaatagggttgtc |
366 |
Q |
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| T |
40470562 |
tacaagctattgacaatgaataacccgt--atgaggatattagattttggacactgattttatgtcctcctcaatcctcatcatcactaatagggttgtc |
40470659 |
T |
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| Q |
367 |
ttctagaaacaatgtaaatttagataatagggtta |
401 |
Q |
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| T |
40470660 |
ttctagaaacaatgtaaaattagataatagggtta |
40470694 |
T |
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