View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_16 (Length: 381)
Name: NF9826_low_16
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 44651187 - 44651549
Alignment:
| Q |
1 |
aataaatggaaaatgagataataattggttggtggttgtccttttctatggctgaagactgattgggaatgttaatcaattgcatgaaggaagcagccgt |
100 |
Q |
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| T |
44651187 |
aataaatggaaaatgagataataattggttggtggttgtccttttctatggctgaagactgattgggaatgttaatcaattgcatgaaggaagcagccgt |
44651286 |
T |
|
| Q |
101 |
taggtcccaattttgaaagacttttgttctgtacactatcttagaaatcgattattattctcatgcaaatttcactaaccaagcctttcagtaattttaa |
200 |
Q |
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| T |
44651287 |
taggtcccaattttgaaagacttttgttctgtacactatattagaaatcgataattattctcatgcaaatttcactaaccaagcctttcagtaattttaa |
44651386 |
T |
|
| Q |
201 |
atagtgcatgtatatgttccactttatcattcccaagaatatgaagtgtttataaacaatttagtgcattatatattctacaaataatgatctcctttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44651387 |
atagtgcatgtatatgttccactttatcattcccgagaatatgaagtgtttataaacaatttagtgcattatatattctacaaataatgatctcctttgg |
44651486 |
T |
|
| Q |
301 |
gtaaaaccattttttctcaatttttgtatatacctacggcaaaacaacaatcaaactgatatg |
363 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44651487 |
gtaaaagcattttttctcaatttttgtatatacctaccgcaaaacaacaatcaaactgatatg |
44651549 |
T |
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