View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_17 (Length: 369)
Name: NF9826_low_17
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 43831824 - 43832136
Alignment:
| Q |
11 |
caaaggggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccatttgacatgccttgttagcaataccc |
110 |
Q |
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| T |
43831824 |
caaaagggagataatagtcaaagcaagacccatttttgcggcaaatataatcttccttggatcagaccgacccatttgacatgccttgttagcaataccc |
43831923 |
T |
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| Q |
111 |
tctattgtcttcaaacacttcatcatcattgatgtttccacttgttcttcattcaaacaaattcctatatgagaataatcatgatcaaccttcacggaga |
210 |
Q |
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| T |
43831924 |
tccattgtcttcaaacacttcatcatcattgatgtttccacttgttcttcattcaaacaaattcctatatgagaataatcatgatcaaccttcacggaga |
43832023 |
T |
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| Q |
211 |
gaagtttctcttcattctcagctaagccgttatttaccaactttgtagccatgccaagcaatgagagagaaaagtgatgaacatgtatacaaggtgtcgt |
310 |
Q |
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| T |
43832024 |
gaagtttctcttcatcctcagctaagccgttatttaccaactttgtagccatgccaagcaatgagagagaaaagtgatgaacatgtatacaaggtgtcgt |
43832123 |
T |
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| Q |
311 |
acatgttattata |
323 |
Q |
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| T |
43832124 |
acatgttattata |
43832136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 43816920 - 43816996
Alignment:
| Q |
11 |
caaaggggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccattt |
87 |
Q |
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| T |
43816920 |
caaaagggagataatagtcaaagcaagacccattttagcagcaaaaatgatctttcttggatcagaacgacccattt |
43816996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 43824856 - 43824932
Alignment:
| Q |
11 |
caaaggggagataatagtcaaagcaagacccatttttgcagcaaatataatcttccttggatcagaccgacccattt |
87 |
Q |
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| T |
43824856 |
caaaagggagataagggccaaagcaagacccattttagcagcgaaaatgatcttccttggatcagaacgacccattt |
43824932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 43832149 - 43832181
Alignment:
| Q |
321 |
ataacctaatggaataggaacagatttaccaat |
353 |
Q |
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| T |
43832149 |
ataacctaatggaataggaacagatttaccaat |
43832181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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