View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9826_low_18 (Length: 365)

Name: NF9826_low_18
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9826_low_18
NF9826_low_18
[»] chr8 (4 HSPs)
chr8 (136-349)||(15050230-15050443)
chr8 (150-303)||(10181847-10182003)
chr8 (257-323)||(39580365-39580431)
chr8 (211-275)||(38499047-38499112)
[»] chr1 (14 HSPs)
chr1 (146-324)||(25537474-25537652)
chr1 (142-323)||(27786936-27787120)
chr1 (136-317)||(26842167-26842343)
chr1 (136-323)||(29099302-29099493)
chr1 (180-270)||(47896538-47896630)
chr1 (149-220)||(15495749-15495821)
chr1 (232-322)||(14351498-14351590)
chr1 (220-324)||(10494560-10494666)
chr1 (211-277)||(4654041-4654108)
chr1 (212-258)||(8039068-8039114)
chr1 (235-321)||(11814373-11814461)
chr1 (148-190)||(2077603-2077645)
chr1 (220-323)||(2077703-2077807)
chr1 (142-190)||(11814606-11814654)
[»] chr3 (5 HSPs)
chr3 (149-353)||(46743089-46743296)
chr3 (180-266)||(11387299-11387387)
chr3 (220-323)||(31698960-31699065)
chr3 (142-190)||(31699132-31699180)
chr3 (216-248)||(31625722-31625754)
[»] chr4 (4 HSPs)
chr4 (149-323)||(45872888-45873064)
chr4 (142-353)||(42677797-42678010)
chr4 (149-222)||(12130392-12130466)
chr4 (226-304)||(52635427-52635506)
[»] chr2 (9 HSPs)
chr2 (142-353)||(27888509-27888723)
chr2 (149-304)||(1533084-1533242)
chr2 (142-323)||(40899991-40900175)
chr2 (220-322)||(14951132-14951236)
chr2 (223-323)||(9910340-9910442)
chr2 (220-322)||(6186566-6186670)
chr2 (149-220)||(6705381-6705453)
chr2 (217-301)||(38531651-38531736)
chr2 (150-190)||(9910512-9910552)
[»] chr7 (10 HSPs)
chr7 (142-304)||(21590732-21590897)
chr7 (142-323)||(32978983-32979167)
chr7 (142-277)||(34293707-34293846)
chr7 (212-277)||(10365599-10365665)
chr7 (217-304)||(26711908-26711998)
chr7 (142-258)||(36582673-36582791)
chr7 (220-323)||(24717770-24717875)
chr7 (235-304)||(43047987-43048058)
chr7 (148-218)||(26712100-26712171)
chr7 (142-190)||(43047868-43047916)
[»] chr6 (7 HSPs)
chr6 (194-323)||(10670267-10670398)
chr6 (142-277)||(9566644-9566783)
chr6 (217-323)||(30845146-30845254)
chr6 (214-277)||(11366567-11366631)
chr6 (226-322)||(24350488-24350586)
chr6 (225-324)||(10772617-10772718)
chr6 (217-255)||(24842980-24843018)
[»] chr5 (13 HSPs)
chr5 (197-323)||(24867339-24867467)
chr5 (209-323)||(26331682-26331798)
chr5 (217-322)||(12156004-12156111)
chr5 (149-219)||(40680747-40680818)
chr5 (209-323)||(26331341-26331457)
chr5 (232-324)||(40600176-40600270)
chr5 (220-323)||(42269085-42269190)
chr5 (224-297)||(11470621-11470696)
chr5 (142-216)||(12156215-12156286)
chr5 (142-216)||(34574329-34574405)
chr5 (143-190)||(40600061-40600108)
chr5 (152-216)||(11470806-11470870)
chr5 (217-258)||(34574480-34574521)
[»] scaffold0005 (1 HSPs)
scaffold0005 (211-277)||(269764-269831)
[»] scaffold0974 (2 HSPs)
scaffold0974 (220-323)||(2687-2792)
scaffold0974 (142-190)||(2583-2631)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 136 - 349
Target Start/End: Original strand, 15050230 - 15050443
Alignment:
Q  136 acgctctttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatgatgttagacggtgttgcttgtttaaggtgcggttacatgagt 235  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15050230 acgctttttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatgatgttagacggtgttgcttgtttaaggtgcggttacatgagt 15050329  T
Q  236 ttttggtaggtttgatggttattggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttgannnnnnnagat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||       ||||    
T  15050330 ttttggtaggtttgatggttattggagaggtttttcaacggtatgacacaagatttgtttctgctattgcgtaggcgtttagactttgatttttttagat 15050429  T
Q  336 gatttcttggtttg 349  Q
    ||||||||||||||    
T  15050430 gatttcttggtttg 15050443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 10182003 - 10181847
Alignment:
Q  150 ttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggttt 248  Q
    ||||||||||||||||||||||||| ||| |||||||||||| | |||||| | |||||  |||||||||||||||||||||||  ||||||||||||||    
T  10182003 ttttcttctatgagtttgttgttgatggggttttcaaatacacggatgttatatggtgtgacttgtttaaggtgcggttacatggatttttggtaggttt 10181904  T
Q  249 gatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctatt 303  Q
    ||||| ||  |||||||||||||| |||||| || |||| ||||||||| |||||||    
T  10181903 gatggctattttggagaggttttttaacggtttggcacatgatttgtttatgctatt 10181847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 39580365 - 39580431
Alignment:
Q  257 ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttg 323  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||    
T  39580365 ttggatagatttttcaacggtttgacacaagatttgtttatgctattgtgcagacgtttagactttg 39580431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 38499112 - 38499047
Alignment:
Q  211 ttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta-ttggagaggtttttcaacg 275  Q
    ||||||||||||| |||||||| |||||||||| |||| ||||||| || ||||||||||| ||||    
T  38499112 ttgtttaaggtgcagttacatgggtttttggtatgtttaatggttatttagagaggttttttaacg 38499047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 146 - 324
Target Start/End: Complemental strand, 25537652 - 25537474
Alignment:
Q  146 tgtgttttcttctatgagtttgttgttgaggggattttcaaatacatgatgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtagg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25537652 tgtgttttcttctatgagtttgttgttgaggggattttcaaatacatgatgttagacggtgtggcttgtttaaggtgcggttacatgagtttttggtagg 25537553  T
Q  246 tttgatggttattggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  25537552 tttgatggttattggagaggtttttcaacggtatgacacaagatttgtttctgctatttcgtaggcgtttagactttga 25537474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 323
Target Start/End: Original strand, 27786936 - 27787120
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttg 240  Q
    |||||| |||||||| ||||||||||||||||| ||| |||||||||||| | |||||||| ||||| ||||||||||||||| |||||||| |||||||    
T  27786936 tttgtgggttttcttttatgagtttgttgttgatggggttttcaaatacacggatgttagatggtgtggcttgtttaaggtgcagttacatgggtttttg 27787035  T
Q  241 gtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttg 323  Q
    ||||||||||||||||  |||||||||||||| || ||| || |  |||||||||||||||||||| | || ||||| |||||||    
T  27787036 gtaggtttgatggttattttggagaggttttttaatggtttggcttaagatttgtttctgctattgcgcagacgtttggactttg 27787120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 136 - 317
Target Start/End: Original strand, 26842167 - 26842343
Alignment:
Q  136 acgctctttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatgatgttagacggtgttgcttgtttaaggtgcggttacatgagt 235  Q
    ||||| ||||||  |||||||||||||||||||||||| ||   ||||||||||||||   ||||||||||| | ||||||||| ||||| |||||| ||    
T  26842167 acgctttttgtggattttcttctatgagtttgttgttgggg---ttttcaaatacatg---ttagacggtgtgg-ttgtttaagatgcgggtacatgggt 26842259  T
Q  236 ttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||    
T  26842260 ttttggtaggtttgatggttagtttggagaggtttttcaacggtatgacacaagatttgtttctcctattgcgcaggtgtttag 26842343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 136 - 323
Target Start/End: Complemental strand, 29099493 - 29099302
Alignment:
Q  136 acgctctttgtgtgttttcttctatgagtttgttgttgagggga-ttttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatga 233  Q
    ||||| |||||| ||||||||||||||||||||||||||||||  ||||||||| |||| |||||||| ||||| |||||||||||| | | |||||||     
T  29099493 acgctttttgtgggttttcttctatgagtttgttgttgaggggggttttcaaatgcatggatgttagatggtgtggcttgtttaaggcgtgattacatgg 29099394  T
Q  234 gtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttg 323  Q
      |||||||| ||||||||||||||  ||||||||||||||||| |||| ||||| |||||||| |||||||| | |  |||||||||||||    
T  29099393 acttttggtaagtttgatggttattttggagaggtttttcaacgatatggcacaaaatttgtttatgctattgcgcaaacgtttagactttg 29099302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 47896630 - 47896538
Alignment:
Q  180 ttttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta-ttggagaggttttt 270  Q
    |||||||||||| | |||||||  ||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  47896630 ttttcaaatacacggatgttagctggtgtggtttgtttaaggtgcggttacatgggtttttggtaggtttgatggttatttggagaggttttt 47896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 15495821 - 15495749
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaatacat-gatgttagacggtgttgcttgtttaagg 220  Q
    |||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||| ||||||||||||    
T  15495821 gttttcttctatgagtttgttgttgatgaggttttcaaatacatggatgttagacggtgtggcttgtttaagg 15495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 322
Target Start/End: Original strand, 14351498 - 14351590
Alignment:
Q  232 gagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagacttt 322  Q
    |||||||||||||||||||||||||||  |||| |||||| ||| ||| || ||||||||||||||||||||||| |  || |||||||||||    
T  14351498 gagtttttggtaggtttgatggttattttggaggggttttgcaatggtttggcacaagatttgtttctgctattgcgcgggtgtttagacttt 14351590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 10494666 - 10494560
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttattggagagg--tttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    ||||||||||| |  ||||||||||||||||||||||||  | |||  |||| ||| ||| || |||||||||||||||||||||||   ||||||||||    
T  10494666 gtgcggttacacggatttttggtaggtttgatggttattttataggggttttgcaatggtttggcacaagatttgtttctgctattgcaaaggcgtttag 10494567  T
Q  318 actttga 324  Q
    |||||||    
T  10494566 actttga 10494560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 4654041 - 4654108
Alignment:
Q  211 ttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta-ttggagaggtttttcaacggt 277  Q
    |||||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  4654041 ttgtttaaagtgcggttacatgggtttttggtagatttgatgattatttggagaggttttttaacggt 4654108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 8039114 - 8039068
Alignment:
Q  212 tgtttaaggtgcggttacatgagtttttggtaggtttgatggttatt 258  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  8039114 tgtttaaggtgtggttacatgggtttttggtaggtttgatggttatt 8039068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 11814461 - 11814373
Alignment:
Q  235 tttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactt 321  Q
    |||||| |||||||||||||||  |||||| |||||| |||| ||  | |||||||||| |||||||||||| | | ||||||||||||    
T  11814461 tttttgctaggtttgatggttactttggaggggttttgcaacagttaggcacaagatttatttctgctattgcgcaagcgtttagactt 11814373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 2077603 - 2077645
Alignment:
Q  148 tgttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    ||||||||||||||||||||||||| | ||| |||||||||||    
T  2077603 tgttttcttctatgagtttgttgttaatggggttttcaaatac 2077645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 2077703 - 2077807
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    ||||||||||| ||||||| ||||||||||||| |||||  |||  |||||| ||||||| |  ||||||| |||||| ||||||||   || |||||||    
T  2077703 gtgcggttacaggagtttt-ggtaggtttgatgattattttggatgggttttgcaacggttttgcacaagacttgtttatgctattgctcagacgtttag 2077801  T
Q  318 actttg 323  Q
    ||||||    
T  2077802 actttg 2077807  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 11814654 - 11814606
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    |||||| |||||||||||||||||||||||| |  || |||||||||||    
T  11814654 tttgtgggttttcttctatgagtttgttgttaatagggttttcaaatac 11814606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 149 - 353
Target Start/End: Original strand, 46743089 - 46743296
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtt 247  Q
    |||||||||||||||||||||||||| ||| |||||||||||| | |||||||| ||||| |||||||||||||||| || |||||||||||||||||||    
T  46743089 gttttcttctatgagtttgttgttgatggggttttcaaatacacggatgttagatggtgtggcttgtttaaggtgcgattgcatgagtttttggtaggtt 46743188  T
Q  248 tgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttgannnnnnnagatgatttcttgg 345  Q
    |||||||||  ||||| |||||||| || ||| || ||||||||||||||||||||||| |  ||||||| |||||||        |||||| |||||||    
T  46743189 tgatggttattttggataggttttttaatggtttggcacaagatttgtttctgctattgcgcgggcgtttggactttggtttttagagatgacttcttgg 46743288  T
Q  346 tttgatgt 353  Q
    ||||||||    
T  46743289 tttgatgt 46743296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 11387387 - 11387299
Alignment:
Q  180 ttttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtttgatggttat-tggagaggt 266  Q
    |||||||||||| | |||||||  ||||| | ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  11387387 ttttcaaatacacggatgttagctggtgtggtttgtttaaggtgcggttacgtgggtttttggtaggtttgatggttatctggagaggt 11387299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 31699065 - 31698960
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    ||||||||||| | |||||||||||| || |||||||||  |||  |||||| |||| || |||||||||| |||||| || |||||  ||||| |||||    
T  31699065 gtgcggttacacgggtttttggtaggattcatggttattttggatgggttttgcaacagtttgacacaagacttgtttatgttattgcttaggcatttag 31698966  T
Q  318 actttg 323  Q
    ||||||    
T  31698965 actttg 31698960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 31699180 - 31699132
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    |||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  31699180 tttgtgggttttcttctatgagtttgttgttaatggggttttcaaatac 31699132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 31625754 - 31625722
Alignment:
Q  216 taaggtgcggttacatgagtttttggtaggttt 248  Q
    ||||||||||||||||| |||||||||||||||    
T  31625754 taaggtgcggttacatgggtttttggtaggttt 31625722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 323
Target Start/End: Complemental strand, 45873064 - 45872888
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtt 247  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| |  |||||||||||||||||||| || ||||||||||||||    
T  45873064 gttttcttctatgagtttgttgttgagggg-ttttcagatacatggatgttagacggtatgacttgtttaaggtgcggttacgtgggtttttggtaggtt 45872966  T
Q  248 tgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttg 323  Q
    || ||||||  ||||||| ||||| ||||||| |   |||||||||||||||||||||| | | ||||||||||||||    
T  45872965 tggtggttattttggagacgttttgcaacggtttcgtacaagatttgtttctgctattgcgcatgcgtttagactttg 45872888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 142 - 353
Target Start/End: Original strand, 42677797 - 42678010
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttg 240  Q
    |||||| |||||||||||||||||||||||||| | | ||||||| |||||| |||||||||  |||  |||||||||||||||||||||||||||| ||    
T  42677797 tttgtgggttttcttctatgagtttgttgttgatgaggttttcaa-tacatggatgttagacactgtgacttgtttaaggtgcggttacatgagtttgtg 42677895  T
Q  241 gtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttgannnnnnnagatgat 338  Q
    |||||||| |||||||  ||| |||||||||||||| || ||  ||||||||| ||| || ||||||| ||||||||||||||||        ||||||     
T  42677896 gtaggtttcatggttattttgaagaggtttttcaacagtttggtacaagatttttttatgttattgtgcaggcgtttagactttggttttgagagatgac 42677995  T
Q  339 ttcttggtttgatgt 353  Q
    |||||||||||||||    
T  42677996 ttcttggtttgatgt 42678010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 12130466 - 12130392
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaatacat-gatgttagacggtgttgcttgtttaaggtg 222  Q
    |||||||||||||||||||||||||| | | ||||||||||||| |||||||||||  || ||||||||||||||    
T  12130466 gttttcttctatgagtttgttgttgatgaggttttcaaatacatggatgttagacgacgtggcttgtttaaggtg 12130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 304
Target Start/End: Complemental strand, 52635506 - 52635427
Alignment:
Q  226 ttacatgagtttttggtaggtttgatggttattggagagg-tttttcaacggtatgacacaagatttgtttctgctattg 304  Q
    ||||| |||||||||||||||||||||||||||   |||| |||| ||||| | || |||||||||||||||||||||||    
T  52635506 ttacacgagtttttggtaggtttgatggttattttggaggattttgcaacgatttggcacaagatttgtttctgctattg 52635427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 353
Target Start/End: Complemental strand, 27888723 - 27888509
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttg 240  Q
    |||||| |||||| ||||||||||||||||||| ||| |||||||| ||| | |||||||  || || ||||||||||  ||||||||||||||||||||    
T  27888723 tttgtgggttttcctctatgagtttgttgttgatggggttttcaaacacacggatgttagctggcgtggcttgtttaaactgcggttacatgagtttttg 27888624  T
Q  241 gtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttgannnnnnnagatgat 338  Q
    ||||||| ||||||||||  |||||||||||| || ||| ||||||||||||||||||| |||||| | || |||||||||||||        ||||||     
T  27888623 gtaggttcgatggttattttggagaggttttttaaaggtttgacacaagatttgtttctactattgcgcagacgtttagactttggtttttggagatgac 27888524  T
Q  339 ttcttggtttgatgt 353  Q
    |||||||||||||||    
T  27888523 ttcttggtttgatgt 27888509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 149 - 304
Target Start/End: Complemental strand, 1533242 - 1533084
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaataca-tgatgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtt 247  Q
    |||||||||||||||||||||||||| ||| ||||||||||||  ||| ||||| ||| |  ||||||||||||||| ||||||| |||| ||||| |||    
T  1533242 gttttcttctatgagtttgttgttgatggggttttcaaatacacggatattagatggtatgacttgtttaaggtgcgattacatgggtttatggtaagtt 1533143  T
Q  248 tgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattg 304  Q
    |||||||||  |||||||||||||| || ||| || |||||||||||||||||||||||    
T  1533142 tgatggttattttggagaggttttttaatggtttggcacaagatttgtttctgctattg 1533084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 142 - 323
Target Start/End: Complemental strand, 40900175 - 40899991
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttg 240  Q
    |||||| ||||||||| |||||||||||| ||| | | |||||||||||||| ||||||||||   | ||||||||||||| ||||||||||  ||||||    
T  40900175 tttgtgggttttcttccatgagtttgttgatgatgaggttttcaaatacatggatgttagacgtcatggcttgtttaaggttcggttacatggatttttg 40900076  T
Q  241 gtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttg 323  Q
    |||||||| |||| ||  ||||||||||||||  ||||| || |||||||||||||||| ||| ||  ||| |||||||| ||||    
T  40900075 gtaggtttcatggatattttggagaggtttttttacggtttggcacaagatttgtttctactaatgcatagacgtttagaatttg 40899991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 14951132 - 14951236
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    ||||| ||||| |||||||||||||||||||||||||||  |||| |||||| ||||||| || ||||||||||||||||||||||| |  || ||||||    
T  14951132 gtgcgattacacgagtttttggtaggtttgatggttattttggaggggttttgcaacggtttggcacaagatttgtttctgctattgcgcgggtgtttag 14951231  T
Q  318 acttt 322  Q
    |||||    
T  14951232 acttt 14951236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 323
Target Start/End: Complemental strand, 9910442 - 9910340
Alignment:
Q  223 cggttacatgagtttttggtaggtttgatggttattggaga--ggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagact 320  Q
    |||||||| |||||||||||||| ||||| ||||||   ||  |||||| ||||||| || ||||||| |||||||||||||||   |||||||||||||    
T  9910442 cggttacacgagtttttggtaggattgatagttatttttgatgggttttgcaacggtttgtcacaagacttgtttctgctattgctcaggcgtttagact 9910343  T
Q  321 ttg 323  Q
    |||    
T  9910342 ttg 9910340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 6186566 - 6186670
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    ||||| ||||| |||||||||||| |||||||  |||||  | || |||||| ||||||| ||||||||||||||||| |||||||| |  || ||||||    
T  6186566 gtgcgattacacgagtttttggtaagtttgataattattttgaaggggttttgcaacggtttgacacaagatttgtttttgctattgcgcgggtgtttag 6186665  T
Q  318 acttt 322  Q
    |||||    
T  6186666 acttt 6186670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 6705453 - 6705381
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaagg 220  Q
    |||||||| |||||||||||||||||     |||||||||||||| |||||||||||||| ||||||||||||    
T  6705453 gttttcttatatgagtttgttgttgataatgttttcaaatacatggatgttagacggtgtggcttgtttaagg 6705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 38531651 - 38531736
Alignment:
Q  217 aaggtgcggttacatgagtttttggtaggtttgatggt--tattggagaggtttttcaacggtatgacacaagatttgtttctgcta 301  Q
    |||||||||||||| | |||||||||||||||||||||  | |||||| |||||| |||| || |  ||||||||||||||||||||    
T  38531651 aaggtgcggttacacgggtttttggtaggtttgatggttcttttggag-ggttttgcaacagtttagcacaagatttgtttctgcta 38531736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 9910552 - 9910512
Alignment:
Q  150 ttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    ||||||||||||||||||||||| | ||| |||||||||||    
T  9910552 ttttcttctatgagtttgttgttaatggggttttcaaatac 9910512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 142 - 304
Target Start/End: Original strand, 21590732 - 21590897
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttg 240  Q
    |||||| |||||||||||||||||||||| ||| ||  |||||||||||||| |||||| |||| ||  ||||||||||||||||||| |||  ||||||    
T  21590732 tttgtgggttttcttctatgagtttgttgatgatggagttttcaaatacatggatgttaaacggcgtgacttgtttaaggtgcggttagatggatttttg 21590831  T
Q  241 gtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattg 304  Q
    ||||||||| ||||||  |||||||| |||||| ||||| || |||||||||||||||||||||||    
T  21590832 gtaggtttgttggttattttggagagatttttctacggtttggcacaagatttgtttctgctattg 21590897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 142 - 323
Target Start/End: Complemental strand, 32979167 - 32978983
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttg 240  Q
    |||||| |||||||||||||||||||||||||| ||  ||||||||||   | || ||||| ||||| |||||||||||||||||||||||| |||||||    
T  32979167 tttgtgggttttcttctatgagtttgttgttgatggagttttcaaataggcggatattagatggtgtggcttgtttaaggtgcggttacatgggtttttg 32979068  T
Q  241 gtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttg 323  Q
    || |||||||||||||  |||||||||||||| ||| || || |||||||||||||| ||  |||| | |||||||| |||||||    
T  32979067 gtgggtttgatggttattttggagaggttttttaacagtttggcacaagatttgtttatgtcattgcgcaggcgtttggactttg 32978983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 34293707 - 34293846
Alignment:
Q  142 tttgtgtgttttcttctatgagttt-gttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagttttt 239  Q
    |||||| ||||||||||| |||||| |||||||| | | |||||||||||||| |||||||  | ||| | ||||||||||||||||||||||  |||||    
T  34293707 tttgtgggttttcttctaggagttttgttgttgatgaggttttcaaatacatggatgttagctgatgtggtttgtttaaggtgcggttacatggattttt 34293806  T
Q  240 ggtaggtttgatggtta--ttggagaggtttttcaacggt 277  Q
    |||||||||||||||||  ||||||| |||||| ||||||    
T  34293807 ggtaggtttgatggttattttggagatgttttttaacggt 34293846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 10365665 - 10365599
Alignment:
Q  212 tgtttaaggtgcggttacatgagtttttggtaggtttgatggtta-ttggagaggtttttcaacggt 277  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  10365665 tgtttaaggtgcggttacatgggtttttggtaggtttgatggttatttggagaggttttttaacggt 10365599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 26711998 - 26711908
Alignment:
Q  217 aaggtgcggttacatgagtttttggtaggtttgatggttattggagagg--tttttcaacggtatgacac-aagatttgtttctgctattg 304  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||  |||||||||||| || ||| |||||||||||| |||||||    
T  26711998 aaggtgcggttacatgggtttttggtaggtttgatggttattttagagggatttttcaacggtttggcactaagatttgtttccgctattg 26711908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 36582791 - 36582673
Alignment:
Q  142 tttgtgtgttttcttctatgagttt-gttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagttttt 239  Q
    |||||| ||||||||||| |||||| |||||||| | | |||||||||||| | || |||   ||||| | |||||||| ||||||||||||| ||||||    
T  36582791 tttgtgggttttcttctacgagttttgttgttgatgaggttttcaaatacacggatcttaactggtgtggtttgtttaaagtgcggttacatgggttttt 36582692  T
Q  240 ggtaggtttgatggttatt 258  Q
    |||||||||||||||||||    
T  36582691 ggtaggtttgatggttatt 36582673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 24717875 - 24717770
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    |||||||||| ||  ||||||||||| ||||||||||||  |||  |||||| |||| || || ||||||| |||||||| ||||||   ||||||||||    
T  24717875 gtgcggttacctggttttttggtaggattgatggttattttggatgggttttgcaactgtttggcacaagacttgtttctactattgctcaggcgtttag 24717776  T
Q  318 actttg 323  Q
    ||||||    
T  24717775 actttg 24717770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 43047987 - 43048058
Alignment:
Q  235 tttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattg 304  Q
    ||||||||||||||||||||||  |||||  | |||| ||||||| | ||||||||||||||| ||||||||    
T  43047987 tttttggtaggtttgatggttattttggatggattttgcaacggttttacacaagatttgtttatgctattg 43048058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 26712171 - 26712100
Alignment:
Q  148 tgttttcttctatgagtttgttgttgaggggattttcaaataca-tgatgttagacggtgttgcttgtttaa 218  Q
    |||||||||||||||||| |||| ||| ||| ||||||||||||  |||||||||| ||||  |||||||||    
T  26712171 tgttttcttctatgagttcgttgctgatggggttttcaaatacacggatgttagaccgtgtaacttgtttaa 26712100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 43047868 - 43047916
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    |||||| |||||||||||||||||||||||| | ||| ||||| |||||    
T  43047868 tttgtgggttttcttctatgagtttgttgttaatggggttttctaatac 43047916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 323
Target Start/End: Original strand, 10670267 - 10670398
Alignment:
Q  194 atgttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagattt 291  Q
    ||||||||||||||  |||||||||||||||||||||||  ||||| |||| |||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  10670267 atgttagacggtgtgacttgtttaaggtgcggttacatggatttttagtagatttgatagttattttggagaggtttttcaacggtttgacacaagattt 10670366  T
Q  292 gtttctgctattgtgtaggcgtttagactttg 323  Q
    ||||||||||||| | |||| |||||||||||    
T  10670367 gtttctgctattgcgcaggcatttagactttg 10670398  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 277
Target Start/End: Complemental strand, 9566783 - 9566644
Alignment:
Q  142 tttgtgtgttttcttctatgagttt-gttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaaggtgcggttacatgagttttt 239  Q
    |||||| ||||||||||| |||||| |||||||| | | |||||||||||||| |||||||  ||||| | |||||||||||||||||||||| ||||||    
T  9566783 tttgtgggttttcttctacgagttttgttgttgatgaggttttcaaatacatggatgttagctggtgtagtttgtttaaggtgcggttacatgggttttt 9566684  T
Q  240 ggtaggtttgatggtta--ttggagaggtttttcaacggt 277  Q
    |||||||||||||||||  ||||||| |||||| ||||||    
T  9566683 ggtaggtttgatggttattttggagatgttttttaacggt 9566644  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 323
Target Start/End: Complemental strand, 30845254 - 30845146
Alignment:
Q  217 aaggtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtt 314  Q
    ||||||||||||| ||  ||||||||||||||||||||||||  |||| |||||| ||||||| |||||||||||||||||||||||||| || || |||    
T  30845254 aaggtgcggttacctggatttttggtaggtttgatggttattttggaggggttttgcaacggtttgacacaagatttgtttctgctattgcgtgggtgtt 30845155  T
Q  315 tagactttg 323  Q
    |||||||||    
T  30845154 tagactttg 30845146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 11366631 - 11366567
Alignment:
Q  214 tttaaggtgcggttacatgagtttttggtaggtttgatggtta-ttggagaggtttttcaacggt 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  11366631 tttaatgtgcggttacatgagtttttggtaggtttgatggttatttggagaggttttttaacggt 11366567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 24350488 - 24350586
Alignment:
Q  226 ttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagacttt 322  Q
    ||||| |||||||||||| ||||||||||||||  |||| |||||| ||||||| |  ||||| ||||||||||||||||| |  || |||||||||||    
T  24350488 ttacacgagtttttggtaagtttgatggttattttggaggggttttgcaacggtttagcacaaaatttgtttctgctattgcgcgggagtttagacttt 24350586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 10772718 - 10772617
Alignment:
Q  225 gttacatgagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagacttt 322  Q
    |||||| | |||||||||||||||||||||||  |||||  |||||| ||||||| || ||||||| |||||||||| ||||   | |||||||||||||    
T  10772718 gttacacgggtttttggtaggtttgatggttattttggatgggttttgcaacggtttggcacaagacttgtttctgccattgctcaagcgtttagacttt 10772619  T
Q  323 ga 324  Q
    ||    
T  10772618 ga 10772617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 255
Target Start/End: Complemental strand, 24843018 - 24842980
Alignment:
Q  217 aaggtgcggttacatgagtttttggtaggtttgatggtt 255  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  24843018 aaggtgcggttacacgggtttttggtaggtttgatggtt 24842980  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 24867339 - 24867467
Alignment:
Q  197 ttagacggtgttgcttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtt 294  Q
    ||||||||||| |||||||||||||||||||||||| ||||||  || ||||||||||||  ||||||||| ||||||||||  || |||||||||||||    
T  24867339 ttagacggtgtggcttgtttaaggtgcggttacatgggtttttaatatgtttgatggttattttggagaggattttcaacggattggcacaagatttgtt 24867438  T
Q  295 tctgctattgtgtaggcgtttagactttg 323  Q
    | |||||||| | | ||||||||||||||    
T  24867439 tatgctattgcgcatgcgtttagactttg 24867467  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 26331682 - 26331798
Alignment:
Q  209 gcttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||  || |||| ||||||||||| | |   ||||||||||||| ||||||||      
T  26331682 gcttgtttaaggtgcggttacatgagtttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgca 26331781  T
Q  307 taggcgtttagactttg 323  Q
     || |||||||||||||    
T  26331782 cagacgtttagactttg 26331798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 322
Target Start/End: Complemental strand, 12156111 - 12156004
Alignment:
Q  217 aaggtgcggttacatgagtttttggtaggtttgatggttatt--ggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtt 314  Q
    |||||||| ||||  |||||||||||||||||||||||||||  |||| |||||| ||| ||| |||||||||||||||||||||||||| |  || |||    
T  12156111 aaggtgcgattacgcgagtttttggtaggtttgatggttattttggaggggttttgcaatggtttgacacaagatttgtttctgctattgcgcgggtgtt 12156012  T
Q  315 tagacttt 322  Q
    ||||||||    
T  12156011 tagacttt 12156004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 40680818 - 40680747
Alignment:
Q  149 gttttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgtttaag 219  Q
    ||||||||||||||||||||||||||   | |||||||||||||| |||||||||||||| |||||||||||    
T  40680818 gttttcttctatgagtttgttgttgataaggttttcaaatacatgaatgttagacggtgtggcttgtttaag 40680747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 26331341 - 26331457
Alignment:
Q  209 gcttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtg 306  Q
    |||||||||||||| |||||||||  |||||||||||||||||| |||  || |||| ||||||||||| | |   ||||||||||||| ||||||||      
T  26331341 gcttgtttaaggtgaggttacatggatttttggtaggtttgatgattattttagagatgtttttcaacgatttcgtacaagatttgtttatgctattgca 26331440  T
Q  307 taggcgtttagactttg 323  Q
     || |||||||||||||    
T  26331441 cagacgtttagactttg 26331457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 40600176 - 40600270
Alignment:
Q  232 gagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttagactttga 324  Q
    |||||||||||||||||||||||||  |||||  |||||| ||||||| || ||||||| |||||| ||||||||  |||||||| | |||||||    
T  40600176 gagtttttggtaggtttgatggttattttggacgggttttgcaacggtttggcacaagacttgtttttgctattgcttaggcgttcatactttga 40600270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 42269085 - 42269190
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    ||||||||||  |||||||||||||| ||||||||||  |||||  |||||| |||| || || ||||||| |||||||| ||||||   ||||||||||    
T  42269085 gtgcggttacccgagtttttggtaggattgatggttattttggatgggttttgcaacagtttggcacaagacttgtttctactattgctcaggcgtttag 42269184  T
Q  318 actttg 323  Q
    | ||||    
T  42269185 aatttg 42269190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 11470696 - 11470621
Alignment:
Q  224 ggttacatgagtttttggtaggtttgatggtta--ttggagaggtttttcaacggtatgacacaagatttgtttct 297  Q
    ||||||| |||||||||||||||||||| | ||  ||| || |||||| ||||||| || ||||||||||||||||    
T  11470696 ggttacacgagtttttggtaggtttgatagctattttgaaggggttttgcaacggtttggcacaagatttgtttct 11470621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 12156286 - 12156215
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatacatgatgttagacggtgttgcttgttt 216  Q
    |||||| ||||||||| |||||||||| ||||| | |||||||||||||    ||||||||| ||||||||||||    
T  12156286 tttgtgggttttcttcaatgagtttgtcgttgatgagattttcaaatac---ctgttagacgttgttgcttgttt 12156215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 34574329 - 34574405
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttga-ggggattttcaaatacat-gatgttagacggtgttgcttgttt 216  Q
    |||||| |||||||||||||||||||||||||| | || || |||||||||| ||||||||||  ||| ||||||||    
T  34574329 tttgtgggttttcttctatgagtttgttgttgatgtggtttctcaaatacatggatgttagacaatgtagcttgttt 34574405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 40600061 - 40600108
Alignment:
Q  143 ttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    ||||| |||||||||||||||||||||||| | ||| |||||||||||    
T  40600061 ttgtgggttttcttctatgagtttgttgttaatggggttttcaaatac 40600108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 11470870 - 11470806
Alignment:
Q  152 ttcttctatgagtttgttgttgaggggattttcaaatacatg-atgttagacggtgttgcttgttt 216  Q
    |||||||||| ||| |||||||| ||| |||||||||||||| || ||||||||||| ||||||||    
T  11470870 ttcttctatgggttcgttgttgatggg-ttttcaaatacatggattttagacggtgtagcttgttt 11470806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 34574480 - 34574521
Alignment:
Q  217 aaggtgcggttacatgagtttttggtaggtttgatggttatt 258  Q
    ||||||||||| || || ||||||||||||||||||||||||    
T  34574480 aaggtgcggttgcacgattttttggtaggtttgatggttatt 34574521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 269831 - 269764
Alignment:
Q  211 ttgtttaaggtgcggttacatgagtttttggtaggtttgatggtta-ttggagaggtttttcaacggt 277  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  269831 ttgtttaaggtgcggttacatgggtttttggtaggtttgatggttatttggagaggttttttaacggt 269764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 2687 - 2792
Alignment:
Q  220 gtgcggttacatgagtttttggtaggtttgatggttattggaga--ggtttttcaacggtatgacacaagatttgtttctgctattgtgtaggcgtttag 317  Q
    |||||||||||||||||||||||||| |||||| |||||  |||  || ||| ||||||| || ||||||| |||||||||||||||   ||||||||||    
T  2687 gtgcggttacatgagtttttggtaggattgatgattattttagatgggatttgcaacggtttggcacaagacttgtttctgctattgctcaggcgtttag 2786  T
Q  318 actttg 323  Q
    ||||||    
T  2787 actttg 2792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 2583 - 2631
Alignment:
Q  142 tttgtgtgttttcttctatgagtttgttgttgaggggattttcaaatac 190  Q
    |||||| | |||||||||||||||||||||| |  ||||||||||||||    
T  2583 tttgtgggatttcttctatgagtttgttgttcattggattttcaaatac 2631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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