View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_19 (Length: 347)
Name: NF9826_low_19
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 39225416 - 39225734
Alignment:
| Q |
19 |
catacacggtataatatgacagatttactttactacaattgaattttacagcagtaactacatagaattgaatnnnnnnngaaggataaattaggctcat |
118 |
Q |
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| T |
39225416 |
catacacggtataatatgacagatttactttactacaattgaattttacagcagtaactacatagaattgaataaaaaaagaaggataaattaggctcat |
39225515 |
T |
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| Q |
119 |
atctaatcttttaaagcacatttgaatagtggaattcagctgtaacatatttgttcactgaaaatggagggcataaacatcttctcatcttccctcatcc |
218 |
Q |
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| T |
39225516 |
atctaatcttttaaagcacatttgaatagtggaattcagctgtaacatatttgttcactgaaaatggagggcataaacatcttctcatcttccctcatcc |
39225615 |
T |
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| Q |
219 |
ataagtaatgttaactcccatatatcaaataacatcaacgacatgtattatttccatgttatacttggctatttctcatttccctatctaatgtcaacca |
318 |
Q |
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| T |
39225616 |
ataagtaatgttaactcccatatatcaaataacatcaacgacatgtattatttccatgtcatacttggctatttctcatttccctatctaatgtcaacca |
39225715 |
T |
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| Q |
319 |
tgatactgtgtaccctatg |
337 |
Q |
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||||||||||||||||||| |
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| T |
39225716 |
tgatactgtgtaccctatg |
39225734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 39378524 - 39378455
Alignment:
| Q |
18 |
acatacacggtataatatgacagatttactttactacaattgaattttacagcagtaactacatagaattgaa |
90 |
Q |
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|||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39378524 |
acatacacagtataataagacagatttactttac---aattgaattttacagcagtaactacatagaattgaa |
39378455 |
T |
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