View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_2 (Length: 595)
Name: NF9826_low_2
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 40471266 - 40470701
Alignment:
| Q |
18 |
taattaaactcagttaaattgttacttggtcagtaagattggtatcatttaatcttatatgatatgattatgaggtctagtgatgacacgtgtcagttgt |
117 |
Q |
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| T |
40471266 |
taattaaactcagttaaattgttacttggtcagtaagattggtatcatttaatcttatatgatatgattctgaggtctagtgatgacacgtgtcagttgt |
40471167 |
T |
|
| Q |
118 |
acacttcatctcataggaattgtgaggacagcaagatgaaagctaatacttatagtatacaactacaacctaaacacaattcctctgtttggcttttacc |
217 |
Q |
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| T |
40471166 |
acacttcatctcataggaattgtgaggacagcaagatgaaagctaatacttatagtatacaactacaacctaaacccaattcctctgtttggcttttacc |
40471067 |
T |
|
| Q |
218 |
attcaacaattcatgttttgggtcagtttatggaccacattaactagctacctcactctctaatcccttctatgtgggtcccgttataggacttttgggg |
317 |
Q |
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| T |
40471066 |
attcaacaattcatgttttgggtcagtttatggaccacattaactagctacctcactctctaatcccttctatgtgggtcccgttataggacttttgggg |
40470967 |
T |
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| Q |
318 |
tatttgagtaaggtttggaatggtgttgtggtgggatcagaacaggagggactttttaatagatggtcatatatcataaaataattcaaacttttataaa |
417 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
40470966 |
tatttgagtaaggtttggaatg-----gtggtgggatcagaacaggagggactttttaatagatggtcatatatgataaaagaattcaaacttttataaa |
40470872 |
T |
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| Q |
418 |
taattccaatgaaaatttaaactttagtgaataagatttttgcaatgtggcgatcatagggtaattttattttatttcgtctttatctgcatctcattag |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40470871 |
taattccaatgaaaatttaaactttagtgaataagatttttgcaatgtggcgatcatagggtaattttattttatttggtctttatctgcatctcattag |
40470772 |
T |
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| Q |
518 |
ttatctaatttgccattcacctctcataaataccccatactattattattatgatccatatctctgcttct |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40470771 |
ttatctaatttgccattcacctctcataaataccccatactattattattatgatccatatctttgcttct |
40470701 |
T |
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