View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_22 (Length: 324)
Name: NF9826_low_22
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 51454480 - 51454180
Alignment:
| Q |
15 |
accttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454480 |
accttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacg |
51454381 |
T |
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| Q |
115 |
tcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacat |
214 |
Q |
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| T |
51454380 |
tcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacat |
51454281 |
T |
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| Q |
215 |
tggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgtctgt |
314 |
Q |
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| T |
51454280 |
tggcagtaggttgtgtttcttgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgt |
51454181 |
T |
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| Q |
315 |
g |
315 |
Q |
| |
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| |
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| T |
51454180 |
g |
51454180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 51478658 - 51478372
Alignment:
| Q |
19 |
tcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcat |
118 |
Q |
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| T |
51478658 |
tcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgttttcctcgatcaggaacagattcttcagctacttccaccacgtcat |
51478559 |
T |
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| Q |
119 |
cacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacattggc |
218 |
Q |
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| T |
51478558 |
cacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagcttgtgccacatcaccatcctccaacggtaccatttccgcgccaacattggc |
51478459 |
T |
|
| Q |
219 |
agtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatata |
305 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||||||| |
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| T |
51478458 |
agtgggttgtgtttctcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatata |
51478372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 51474439 - 51474326
Alignment:
| Q |
38 |
acaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaa |
137 |
Q |
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| T |
51474439 |
acaccactgctttggcgccaacatccatagtttgtttttctcgatcaggaacatattcttcagctgctgctgccacatcatcaccttcaccgtcattcaa |
51474340 |
T |
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| Q |
138 |
cgacgccgtttcag |
151 |
Q |
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|||| | ||||||| |
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| T |
51474339 |
cgacactgtttcag |
51474326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 18079056 - 18078871
Alignment:
| Q |
15 |
accttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacg |
114 |
Q |
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||||||||||||| || ||| | || |||| |||||||||||| | ||| ||||||||||||||||||||| | |||||||| ||||| | ||||| |
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| T |
18079056 |
accttcatcgtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgtttttctcgatcaggagcaaattcttcaactgctgctgccacg |
18078957 |
T |
|
| Q |
115 |
tcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgt |
200 |
Q |
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|| |||| |||| | || |||||||| ||| ||| ||| |||||||||| |||| ||||||||||| || |||||||||||||||| |
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| T |
18078956 |
tcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtgccacgtcatcaccctccaacggtaccgt |
18078871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 18077127 - 18076928
Alignment:
| Q |
39 |
caccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaac |
138 |
Q |
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| T |
18077127 |
caccactgtattggcgccaacatccatagtttgtttttctcgaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaac |
18077028 |
T |
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| Q |
139 |
gacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgat |
238 |
Q |
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||||| | ||||| | |||| ||| ||| ||||||| |||| | |||| |||||||||||| ||||||||||| |||||| ||||||||||||| |
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| T |
18077027 |
gacgctgattcagaactaacatcgatagcatgtgccaagtcatctccctctgacggtaccgtttgggcgccaacattcaaagtaggctgtgtttctcgat |
18076928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 18078865 - 18078790
Alignment:
| Q |
234 |
tcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtg |
309 |
Q |
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||||||||||||||||||||||||||| ||| || |||| |||||| ||||||||||||| ||| |||||||| |
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| T |
18078865 |
tcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttactgtatatgtg |
18078790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 18076907 - 18076875
Alignment:
| Q |
277 |
gtgagtgtgactttgattttcactatatatgtg |
309 |
Q |
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| T |
18076907 |
gtgagtgtgactttgattttcactatatatgtg |
18076875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 43159896 - 43159816
Alignment:
| Q |
18 |
ttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttc |
98 |
Q |
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|||||||||| |||||||| || ||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
43159896 |
ttcatcgtccgtcaacagcaactccaccgtattggcgccaacattcatagcttgtttttcttgatcaggaacagattcttc |
43159816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 43159745 - 43159692
Alignment:
| Q |
52 |
gcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgct |
105 |
Q |
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| T |
43159745 |
gcgccaacattcatagcttgtttatcttgatcaggaacagactcttctgctgct |
43159692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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