View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9826_low_23 (Length: 319)

Name: NF9826_low_23
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9826_low_23
NF9826_low_23
[»] chr3 (5 HSPs)
chr3 (97-299)||(24912655-24912854)
chr3 (1-106)||(24911723-24911828)
chr3 (186-302)||(24890823-24890939)
chr3 (209-265)||(32224777-32224833)
chr3 (192-265)||(32242132-32242204)
[»] chr5 (3 HSPs)
chr5 (206-258)||(13712283-13712335)
chr5 (206-269)||(20049335-20049398)
chr5 (206-269)||(19806808-19806871)
[»] chr2 (1 HSPs)
chr2 (208-269)||(15784561-15784622)
[»] chr1 (1 HSPs)
chr1 (209-269)||(26053065-26053125)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 97 - 299
Target Start/End: Original strand, 24912655 - 24912854
Alignment:
Q  97 aactaccagtgaataatcattatgtatgcacgcacgtacctacatacatgtacgtatgtatgttcttagcgttgtgcagtgttgtgcaattggccaaaag 196  Q
    ||||||||| ||||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||| ||||||||||||||| |||| |    
T  24912655 aactaccagagaataatcattatgtatgcacgctcgtac--------atgtacgtatgtatgttcttagcgttgtgctgtgttgtgcaattgggcaaatg 24912746  T
Q  197 tcttcccat-----atgaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttcaactgtattaggttcaagaaggcatt 291  Q
    |||||||||     |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||    
T  24912747 tcttcccattgaatatgaagaaatcaattcatattataaaggttttcctatgtttgaaaactgaaccgatcttcaactgtgttaggttcaagaaggcatt 24912846  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 24911723 - 24911828
Alignment:
Q  1 ctcagcatgcatctgtaaaatgaagtaaaaattaataattataatgtatggtggtttaaaatgtgcataaatgtaacggaataatgtataataatcaact 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  24911723 ctcagcatgcatctgtaaaatgaaataaaaaataataattataatgtatggtggtttaaaatgtgcataaatgtaacggaatagtgaataataatcaact 24911822  T
Q  101 accagt 106  Q
    ||||||    
T  24911823 accagt 24911828  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 24890823 - 24890939
Alignment:
Q  186 ttggccaaaagtcttcccatatgaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttcaactgtattaggttcaagaa 285  Q
    |||| |||||||||||  | |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  24890823 ttgggcaaaagtcttcgaagatgaagaaatcaattcatattacaaaggttttcctgtgtttgaaaacttaaccgaacttcaactgtgttcggttcaagaa 24890922  T
Q  286 ggcattcatgattggga 302  Q
     ||||||||||||||||    
T  24890923 tgcattcatgattggga 24890939  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 32224833 - 32224777
Alignment:
Q  209 aagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttc 265  Q
    |||||||||||||||||||  |||||| |||||||||||||||| |||  |||||||    
T  32224833 aagaaatcaattcatattaccaaggttatcctatgtttgaaaacgtaattgaacttc 32224777  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 32242204 - 32242132
Alignment:
Q  192 aaaagtcttcccatatgaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttc 265  Q
    |||||||| |||| || |||||||||||||||||||  |||| | || | |||||||||||||||| |||||||    
T  32242204 aaaagtctcccca-atcaagaaatcaattcatattaccaaggctatcatgtgtttgaaaacttaactgaacttc 32242132  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 13712335 - 13712283
Alignment:
Q  206 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaacc 258  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||||||||    
T  13712335 atgaagaaatcaattcatattacaaaggctttcctgtgtttgaaaacttaacc 13712283  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 20049335 - 20049398
Alignment:
Q  206 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttcaact 269  Q
    ||||||||||||||||||||||||||||  ||||  |||||  ||||||||| |||||||||||    
T  20049335 atgaagaaatcaattcatattataaaggacttcccgtgttttgaaacttaactgaacttcaact 20049398  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 19806808 - 19806871
Alignment:
Q  206 atgaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttcaact 269  Q
    ||||||||||||||| |||||| ||||| ||| |  |||||||||||||||| || ||||||||    
T  19806808 atgaagaaatcaatttatattacaaaggcttttccgtgtttgaaaacttaactgaccttcaact 19806871  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 15784561 - 15784622
Alignment:
Q  208 gaagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttcaact 269  Q
    |||||||||||||||||| | || || |||||| |||||| |||||||| ||||||||||||    
T  15784561 gaagaaatcaattcatataacaacggatttcctgtgtttggaaacttaatcgaacttcaact 15784622  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 26053125 - 26053065
Alignment:
Q  209 aagaaatcaattcatattataaaggttttcctatgtttgaaaacttaaccgaacttcaact 269  Q
    ||||||||||||||| | | ||| |  |||| |||||||||||||||||||||||| ||||    
T  26053125 aagaaatcaattcatttgacaaaagccttcccatgtttgaaaacttaaccgaacttgaact 26053065  T

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