View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_27 (Length: 308)
Name: NF9826_low_27
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36676527 - 36676217
Alignment:
| Q |
1 |
atagactagaaataaaaaggcaaagagtaacaaaacaacacatatattcatgtgttggtctctaacaag-----gttgaagatatggtaactaacaaatg |
95 |
Q |
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| T |
36676527 |
atagactagaaataaaaaggcaaagagtaacaaaacaacacatatattcatgtgttggtctgtaacaagctaaggttgaagatatggtaactaacaaatg |
36676428 |
T |
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| Q |
96 |
aaaattaagctggaaatagaaataagattacaagaatcaatccaaaaactataagatcataattaat------------taatgactcaatgggttgggc |
183 |
Q |
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| T |
36676427 |
aaaattaagctggaaatagaaataagattacaagaatcaatccaaaaactataagatcataattaattaattaattaattaatgactcaatgggttgggc |
36676328 |
T |
|
| Q |
184 |
aaaggaagaggatgcatgagtgccattaatagtcatttggcacttggagaagaatgatcaatagcagttatcttcttgttgtcttgtacagtagcattac |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36676327 |
aaaggaagaggatgcatgagtgccattaatagtcatttggcacttggagaagaatgatcaatagcagttatcttcttgttgtcttggacagtagcattac |
36676228 |
T |
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| Q |
284 |
tcatgccaact |
294 |
Q |
| |
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||||||||||| |
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| T |
36676227 |
tcatgccaact |
36676217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36686609 - 36686299
Alignment:
| Q |
1 |
atagactagaaataaaaaggcaaagagtaacaaaacaacacatatattcatgtgttggtctctaacaag-----gttgaagatatggtaactaacaaatg |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
36686609 |
atagactagaaataaaaaggcaaagagtaacaaaacaacacatatattcatgtgttggtctgtaacaagctaaggttgaagatatggtaactaacaaatg |
36686510 |
T |
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| Q |
96 |
aaaattaagctggaaatagaaataagattacaagaatcaatccaaaaactataagatcataattaat------------taatgactcaatgggttgggc |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36686509 |
aaaattaagctggaaatagaaataagattacaagaatcaatccaaaaactataagatcataattaattaattaattaattaatgactcaatgggttgggc |
36686410 |
T |
|
| Q |
184 |
aaaggaagaggatgcatgagtgccattaatagtcatttggcacttggagaagaatgatcaatagcagttatcttcttgttgtcttgtacagtagcattac |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36686409 |
aaaggaagaggatgcatgagtgccattaatagtcatttggcacttggagaagaatgatcaatagcagttatcttcttgttgtcttggacagtagcattac |
36686310 |
T |
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| Q |
284 |
tcatgccaact |
294 |
Q |
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||||||||||| |
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| T |
36686309 |
tcatgccaact |
36686299 |
T |
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