View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_3 (Length: 568)
Name: NF9826_low_3
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 4206876 - 4207344
Alignment:
| Q |
1 |
ctaatgaaaacttagagaaaaattatgtttaaatatcttggtttatctattggtgggaacccaagcaaattggtattttgtgaacttttgattgaggatc |
100 |
Q |
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| T |
4206876 |
ctaatgaaaacttagagaaaaattatgtttaaatatcttggtttgtctattggtgggaacccaagaaaattggtattttttgaacttttgatt-aggatc |
4206974 |
T |
|
| Q |
101 |
tgagtgaaaattcaatttgggagaatcgtaaattatctatgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaat |
200 |
Q |
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| T |
4206975 |
tgagtgaaaattcaatttgggagaatcgtaaattatctatgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaat |
4207074 |
T |
|
| Q |
201 |
gatcatttaagagagaagctaaattaattaaacaatacaagtgaaagtaatgtaattttgtgaaatagtcgtaatgtactgttgcgcgatattaagcatt |
300 |
Q |
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| T |
4207075 |
gatcatttaagagagaagctaaattaattaaataatacaagtgaaagcaatgtaatttcgtgaa-tagtcgtgatgtactgttgcgcgatattaagcatt |
4207173 |
T |
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| Q |
301 |
tttgaattgtagtggatggtttgggatttaaacttccttattgtatttgttgttggctatgcattctctttagttcttgtttagctttttatgaccgttt |
400 |
Q |
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| T |
4207174 |
tttgaattgtagtggacggtttgggatttgaatttccttctcgtatttgttgttggttatgcattgtctttagttcttgtttaactttttatgatcgttt |
4207273 |
T |
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| Q |
401 |
gccttcatttttgtatcgtgtaacttattttcttggcatgtcttatgtcaagataaaataaatgaattata |
471 |
Q |
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| T |
4207274 |
gccttcacttttgtatcgtgtaacttattttcttggcatgtcttatgtcaagataaaataaatgaattata |
4207344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 500 - 568
Target Start/End: Original strand, 4207373 - 4207441
Alignment:
| Q |
500 |
aactaactttaattaacttcgactattctattaagaattggatggtagagacaaaattttgtattgcat |
568 |
Q |
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| T |
4207373 |
aactaactttaattaacttcgactattctattaagaattggatggtagagacaaaattttgtattgcat |
4207441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 301
Target Start/End: Complemental strand, 33418131 - 33417972
Alignment:
| Q |
142 |
agttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaatacaag |
241 |
Q |
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| T |
33418131 |
agttgaagtggtcgtggtctcatggaattaagctgagagttaactttggataccaaactcatcatctaagaaagaaattaaattaattaaacaatacaag |
33418032 |
T |
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| Q |
242 |
tgaaagtaatgtaattttgtgaaatagtcgtaatgtactgttgcgcgatattaagcattt |
301 |
Q |
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| T |
33418031 |
tcgaagcaatgtaattttgtgaaatagtcgtgatgtacaattttgcaatattaagcattt |
33417972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 38881454 - 38881352
Alignment:
| Q |
140 |
tgagttgaagtggtcatggtcacatggaattaagctgagagttaactttggataccaaaatgatcatttaagagagaagctaaattaattaaacaataca |
239 |
Q |
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|||||| |||||||| |||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||| ||||||||||||| ||||||| |
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| T |
38881454 |
tgagttaaagtggtcgtggtcacatggaattaagctaagagttaactttagataccaaactcatcatttaagagagaaactaaattaattaagcaataca |
38881355 |
T |
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| Q |
240 |
agt |
242 |
Q |
| |
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||| |
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| T |
38881354 |
agt |
38881352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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