View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_30 (Length: 282)
Name: NF9826_low_30
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 38260559 - 38260732
Alignment:
| Q |
13 |
aacacaacccttaagatatacactcattcatcatttgattatgattcatcatcatcagttggtaccaataattttggtagtcatgctccgggaatcctaa |
112 |
Q |
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| T |
38260559 |
aacacaacccttaagatatacacccattcatcatttgattatgattcatcatcatcagttggtaccaataattttggtagtcatgctccgggaatcctaa |
38260658 |
T |
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| Q |
113 |
aagcaatggagattcttgaaactcggtttgggcatttgcatacatcaacgtcatcattttcgccatcaattaat |
186 |
Q |
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| T |
38260659 |
aagcaatggagattcttgaaactcagtttgggcatttgcatacatcaacgtcatcatcgtcgtcatcaattaat |
38260732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 38244267 - 38244422
Alignment:
| Q |
13 |
aacacaacccttaagatatacactcattcatcatttgattatgattcatcatcatcagttggtaccaataattttggtagtcatgctccgggaatcctaa |
112 |
Q |
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|||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||||| || |
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| T |
38244267 |
aacacaacccctaagataaacactcattcatcatttaattcggattcatcatcatcagctgggatcaataattttggtagtcatgctccgggaatcaaaa |
38244366 |
T |
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| Q |
113 |
aagcaatggagattcttgaaactcggtttgggcatttgcatacatcaacgtcatca |
168 |
Q |
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| T |
38244367 |
aagcgatgcagattcttgaagctcagtttggacatctgcaaacatcaacatcatca |
38244422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 19736676 - 19736751
Alignment:
| Q |
57 |
ttcatcatcatcagttggtaccaataattttggtagtcatgctccgggaatcctaaaagcaatggagattcttgaa |
132 |
Q |
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| T |
19736676 |
ttcatcatcatcagttgctactaataatttcggcagccatgctccaggaatcataaaagcgatggaaattcttgaa |
19736751 |
T |
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