View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_36 (Length: 250)
Name: NF9826_low_36
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26073244 - 26073483
Alignment:
| Q |
1 |
tgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcagatgcatatactcctctttaagaaagttatttccattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
26073244 |
tgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcagatgcatatactcccctttaagcaaggtatttccattc |
26073343 |
T |
|
| Q |
101 |
caagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctactgtaacagtgcacaatttagtaattccccaatctttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
26073344 |
caagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctactgtaactgtgcacagtttagtaattccccaatctttca |
26073443 |
T |
|
| Q |
201 |
agcatttttctaaggctttacctatggtgtcacccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
26073444 |
agcatttttctaaggctttacctatggtgtcacctctatg |
26073483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1670458 - 1670219
Alignment:
| Q |
1 |
tgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcagatgcatatactcctctttaagaaagttatttccattc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
1670458 |
tgaatctataagagataatccatcaaaaacaatcaaattcaagatatgggcacaacaccgcagatgcatatactcccctttaagcaaggtatttccattc |
1670359 |
T |
|
| Q |
101 |
caagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctactgtaacagtgcacaatttagtaattccccaatctttca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
1670358 |
caagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctactgtaactgtgcacagtttagtaattccccaatctttca |
1670259 |
T |
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| Q |
201 |
agcatttttctaaggctttacctatggtgtcacccctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1670258 |
agcatttttctaaggctttacctatggtgtcacccctatg |
1670219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44272021 - 44272260
Alignment:
| Q |
1 |
tgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcagatgcatatactcctctttaagaaagttatttccattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
44272021 |
tgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcagatgcatatactcccctttaagcaaggtatttccattc |
44272120 |
T |
|
| Q |
101 |
caagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctactgtaacagtgcacaatttagtaattccccaatctttca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
44272121 |
caagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctactgtaactgtgcacagtttagtaattccccaatctttca |
44272220 |
T |
|
| Q |
201 |
agcatttttctaaggctttacctatggtgtcacccctatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44272221 |
agcatttttctaaggctttacctatggtgtcacctctatg |
44272260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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