View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_37 (Length: 246)
Name: NF9826_low_37
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_37 |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 8762520 - 8762747
Alignment:
| Q |
3 |
caattttcaaacacatacacacatttcacttgctacattaatttattattcattatatatcaaatctactaacttaattcaagtttaatacttgagaatt |
102 |
Q |
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| T |
8762520 |
caattttcaaacacatacacacatttcacttgctacattaatttattattcattatatatcaaatctactaacttaattcaagtttaatacttgagaatt |
8762619 |
T |
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| Q |
103 |
tc----tataggtaaattttattagatcacagtttaaactctggagattattcaacttcaatattaaggag-agaaaaagaaggatcacgtggagaaata |
197 |
Q |
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| T |
8762620 |
tctatatataggtaaattttattagatcacaatttaaa-tccggagattattcaacttcaatattaaggagcagaaaaagaaggatcacgtggagaaata |
8762718 |
T |
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| Q |
198 |
aatccttagaccaatcccatatgtgactt |
226 |
Q |
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| T |
8762719 |
aatccttagaccaatcccatatgtgactt |
8762747 |
T |
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Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 29431 - 29374
Alignment:
| Q |
68 |
ctactaacttaattcaagtttaatacttgagaatttctataggtaaattttattagat |
125 |
Q |
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| T |
29431 |
ctactaactaaatacaaatttaatacttgagaatttttatttgtaaattttattagat |
29374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 43413 - 43470
Alignment:
| Q |
68 |
ctactaacttaattcaagtttaatacttgagaatttctataggtaaattttattagat |
125 |
Q |
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| T |
43413 |
ctactaactaaatacaaatttaatacttgagaatttttatttgtaaattttattagat |
43470 |
T |
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