View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_4 (Length: 540)
Name: NF9826_low_4
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 122 - 525
Target Start/End: Complemental strand, 24604637 - 24604233
Alignment:
| Q |
122 |
ttgaaacttcttctttactgtgaatctccaagtggtcctaataattcttttaaattatgcaaatttgttcttatatttttcaaaaaattaggcattgatc |
221 |
Q |
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| T |
24604637 |
ttgaaacttcttctttactgtgaatctccaagtggtcctaataattcttttaaattatgcaaatttgttcttatatttttcaaaaatttaggcattgatc |
24604538 |
T |
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| Q |
222 |
cctatattttcaaactttataaattaaccccctataatatttttaaagttgcaaattgctcactataaatgtttaaattttctaaattgatccttcaatt |
321 |
Q |
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| T |
24604537 |
cctatattttcaaactttataaattaaccccctataatatttttaaagttgcaaattgctcactataaatgtttaaattttctaaattgatccttcaatt |
24604438 |
T |
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| Q |
322 |
ttcatatattaaaattggtccctctttttgaatgtcataaaaacaatccaataaagtttatgaat-nnnnnnncttatatttcattcaaaccaacaaaaa |
420 |
Q |
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| T |
24604437 |
ttcatataataaaattggtccctctttttgaatgtcataaaaacaatccaataaagtttatgaataaaaaaaacttatatttcattcaaaccaacaaaaa |
24604338 |
T |
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| Q |
421 |
tagtagaaacatttaagctgtttggtcagttttgaattacggtggggagccatggacgtgtgttttgctaatgctataaatagtagcttcttgtttttcc |
520 |
Q |
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| T |
24604337 |
tagtagaaacatttaagctgtttggtcagttttgaatcacggtggggagccatggacgtgtgttttgctaatgctataaatagtagcttcttgtttttcc |
24604238 |
T |
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| Q |
521 |
atggt |
525 |
Q |
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| T |
24604237 |
atggt |
24604233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 24604760 - 24604698
Alignment:
| Q |
4 |
gaattttagattttctgattattcgtcttaaaggtaaaagttctac---tactagattatttg |
63 |
Q |
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| T |
24604760 |
gaattttagattttctaattattcgtcttaaaggtaaaatttgtaccagtactagattatttg |
24604698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 34934936 - 34934977
Alignment:
| Q |
477 |
cgtgtgttttgctaatgctataaatagtagcttcttgttttt |
518 |
Q |
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| T |
34934936 |
cgtgcgtttttctaatgctataaatagtagtttcttgttttt |
34934977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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