View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_43 (Length: 236)
Name: NF9826_low_43
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 6887360 - 6887555
Alignment:
| Q |
1 |
gtacaatcaacttgtcatcaaagactaaatgtaactaaatttaaatag----tattttgttatctttgagaacttttctcttctgttagacgcaacaaca |
96 |
Q |
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| T |
6887360 |
gtacaatcaacttgtcatcgaagactaaatgtaaccaaatttaaatagcatatattttgttatgtttgagaacttttctcttctgttagacgcaacaaca |
6887459 |
T |
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| Q |
97 |
accgttgattcgttacgtataaatatgtacaagaagaagaaacaaaaagagtagtttatttttcagctttcatataattctcacataaaacacaag |
192 |
Q |
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| T |
6887460 |
accgttgattcgttacgtataaatatgtacaagaagaagaaacaaaaagagtagtttatttttcagctttcatataattctcacataaaacacaag |
6887555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 6887247 - 6887359
Alignment:
| Q |
5 |
aatcaacttgtcatcaaagactaaatgtaactaaatttaaatagtattttgttatctttgagaacttttctcttctgttagacgcaacaacaaccgttga |
104 |
Q |
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||||||||||||||| |||||||||| ||| ||||||| ||||||| ||||||| ||||| |||||||||||| | |||||| ||||||||||||| |
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| T |
6887247 |
aatcaacttgtcatcgaagactaaatttaagcaaatttatatagtatcttgttatgtttgaacacttttctcttccgctagacg---caacaaccgttga |
6887343 |
T |
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| Q |
105 |
ttcgttacgtataaat |
120 |
Q |
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| T |
6887344 |
tttgttacgtataaat |
6887359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 6887058 - 6887107
Alignment:
| Q |
5 |
aatcaacttgtcatcaaagactaaatgtaactaaatttaaatagtatttt |
54 |
Q |
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||||||||||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
6887058 |
aatcaacttgtcatcgaagactaaatgtaagcaaatttaaagagtatttt |
6887107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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