View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9826_low_45 (Length: 224)

Name: NF9826_low_45
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9826_low_45
NF9826_low_45
[»] chr3 (8 HSPs)
chr3 (1-213)||(21652485-21652697)
chr3 (1-155)||(21649313-21649468)
chr3 (9-186)||(14860143-14860321)
chr3 (120-189)||(17396601-17396670)
chr3 (9-82)||(9801128-9801201)
chr3 (9-84)||(431360-431436)
chr3 (120-188)||(13932814-13932882)
chr3 (9-84)||(17485668-17485744)
[»] chr2 (9 HSPs)
chr2 (62-188)||(15390683-15390809)
chr2 (15-145)||(29710929-29711059)
chr2 (9-90)||(45714960-45715042)
chr2 (9-83)||(15825126-15825201)
chr2 (52-91)||(19919154-19919193)
chr2 (9-91)||(27846563-27846646)
chr2 (52-93)||(17671935-17671976)
chr2 (9-73)||(20120329-20120394)
chr2 (4-32)||(24157345-24157373)
[»] chr1 (9 HSPs)
chr1 (9-157)||(14255074-14255223)
chr1 (1-89)||(4601523-4601612)
chr1 (9-86)||(26977709-26977787)
chr1 (9-91)||(34273051-34273134)
chr1 (9-73)||(12177368-12177433)
chr1 (9-89)||(16299618-16299698)
chr1 (120-157)||(29217673-29217710)
chr1 (9-92)||(16050357-16050441)
chr1 (11-113)||(21098891-21098995)
[»] chr6 (9 HSPs)
chr6 (7-130)||(16343504-16343628)
chr6 (14-157)||(22497347-22497490)
chr6 (11-91)||(30680956-30681037)
chr6 (7-113)||(12424356-12424464)
chr6 (9-83)||(31295579-31295654)
chr6 (9-73)||(9292063-9292128)
chr6 (9-73)||(13823421-13823486)
chr6 (9-93)||(34187261-34187346)
chr6 (10-46)||(19305474-19305510)
[»] chr8 (7 HSPs)
chr8 (63-157)||(20055477-20055571)
chr8 (7-188)||(24677629-24677810)
chr8 (9-91)||(17927748-17927831)
chr8 (11-91)||(23269210-23269291)
chr8 (9-46)||(6928134-6928171)
chr8 (52-89)||(17319710-17319747)
chr8 (9-100)||(15057990-15058082)
[»] scaffold0002 (1 HSPs)
scaffold0002 (9-188)||(379583-379763)
[»] chr5 (2 HSPs)
chr5 (9-157)||(25537303-25537452)
chr5 (9-46)||(22903103-22903140)
[»] scaffold0205 (1 HSPs)
scaffold0205 (11-157)||(10961-11108)
[»] chr4 (7 HSPs)
chr4 (1-155)||(5518440-5518595)
chr4 (9-87)||(12683753-12683832)
chr4 (9-87)||(15742197-15742276)
chr4 (10-46)||(13171089-13171125)
chr4 (11-81)||(15514607-15514678)
chr4 (7-73)||(17110680-17110747)
chr4 (9-90)||(47253242-47253324)
[»] chr7 (10 HSPs)
chr7 (9-86)||(39879356-39879434)
chr7 (9-188)||(16987136-16987316)
chr7 (7-172)||(1978945-1979111)
chr7 (7-73)||(5925517-5925584)
chr7 (9-87)||(12644753-12644832)
chr7 (11-89)||(13292169-13292248)
chr7 (16-86)||(21161211-21161281)
chr7 (11-48)||(5929057-5929094)
chr7 (9-88)||(5863154-5863234)
chr7 (120-188)||(5925630-5925698)
[»] scaffold0092 (1 HSPs)
scaffold0092 (11-143)||(21664-21797)
[»] scaffold0103 (1 HSPs)
scaffold0103 (11-157)||(40694-40841)
[»] scaffold0013 (1 HSPs)
scaffold0013 (11-75)||(4470-4535)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 21652697 - 21652485
Alignment:
Q  1 acattatctctcagttccattactgacttgagagttgaagtgctaatggcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactgga 100  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  21652697 acattctctcttagttccattactgacttgagagtttaagtgctaatggcttgcaggcacgtttcgttccaccacgaagactcatcgccaccgcaccgga 21652598  T
Q  101 agacgttaccgattcactagagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggagggaccattcactaa 200  Q
    || ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21652597 agccgttaccgattcactggagcattctctaccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggagggaccgttcactaa 21652498  T
Q  201 atcaccacggtcc 213  Q
    ||| ||| |||||    
T  21652497 atcgccatggtcc 21652485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21649468 - 21649313
Alignment:
Q  1 acattatctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactgg 99  Q
    ||||| |||||||||||||||||||||||||  ||||  ||||||| | |||||||||||| |||||||||||| ||||||||||||||||| |||  ||    
T  21649468 acattctctctcagttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccaccgcatcgg 21649369  T
Q  100 aagacgttaccgattcactagagcattctctgccaccgttgcgattcaactgttct 155  Q
    ||| ||||||||||| |||  |||||| ||||||||| ||| || ||||| |||||    
T  21649368 aagccgttaccgatttactgaagcattttctgccaccattgtgactcaaccgttct 21649313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 14860143 - 14860321
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgtt 107  Q
    |||||||||||||||||| |||||| |   |||||||||| || |||| |||| ||||||||||||||||||| ||||||||||    ||||||| || |    
T  14860143 tctcagttccattactgagttgagaatcagagtgctaatgtgcctgcaagcacctttcgttccaccacgaagattcatcgccaccatgctggaagtcggt 14860242  T
Q  108 accgattcactagagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggag 186  Q
    || |   ||  | |||||||||| |||||||||| | ||||||||| ||| |  |||||||||||||| ||||||||||    
T  14860243 actgtcccatcaaagcattctctaccaccgttgctactcaactgttatcaccggacatatcatttggcactagaaggag 14860321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 17396670 - 17396601
Alignment:
Q  120 gagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggaggga 189  Q
    ||||||||||| | |||| ||||| ||||| ||||||| |  ||| ||||||||||||||||||||||||    
T  17396670 gagcattctctacaaccgctgcgactcaaccgttctcatcggacagatcatttggcgctagaaggaggga 17396601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 9801128 - 9801201
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagact 82  Q
    |||| |||| |||||||||||||| ||||| ||||||| | |||||||||||| |||||||||||  ||||||||    
T  9801128 tctctgttctattactgacttgagtgttga-gtgctaacgtgcttgcaggcacctttcgttccactgcgaagact 9801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 431360 - 431436
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactca 84  Q
    |||||||||||||| ||||||||| || |||||||||| | |  || |||||| |||| ||||||| ||||||||||    
T  431360 tctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcacctttctttccaccgcgaagactca 431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 13932882 - 13932814
Alignment:
Q  120 gagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggaggg 188  Q
    ||||||| || ||||||||||| | |||  ||||||||  | |||||||||||| ||||||||||||||    
T  13932882 gagcattatccgccaccgttgccagtcatttgttctcactagacatatcatttgacgctagaaggaggg 13932814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 17485668 - 17485744
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactca 84  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||   ||| ||| |||||||||||| ||||||||||    
T  17485668 tctcaattccattactgacttgagcgttggggtgctaatgtgcccacagacacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 15390683 - 15390809
Alignment:
Q  62 tttcgttccaccacgaagactcatcgccactgcactggaagacgttaccgattcactagagcattctctgccaccgttgcgattcaactgttctcaacat 161  Q
    |||||||||| | ||||||||||||||  | |  | ||||| ||||||||   ||||||||||||||||| ||||||||| | ||||| ||||||| ||     
T  15390683 tttcgttccatcgcgaagactcatcgctgccgtgccggaagccgttaccgtcacactagagcattctctggcaccgttgccactcaaccgttctcaccag 15390782  T
Q  162 acatatcatttggcgctagaaggaggg 188  Q
    ||| |||||||||||||||||||||||    
T  15390783 acagatcatttggcgctagaaggaggg 15390809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 29711059 - 29710929
Alignment:
Q  15 ttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgttaccgat 113  Q
    |||||||| ||||||||| |||| |||||||| | || ||||  ||| ||| |||||||| ||||||| ||||||| ||| |||||||| ||||||||||    
T  29711059 ttccattagtgacttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccgcgaagacgcatcgccgctgtactggaagccgttaccgat 29710960  T
Q  114 tcactagagcattctctgccaccgttgcgatt 145  Q
     ||  |||||||||||| ||||| ||||||||    
T  29710959 -catcagagcattctctaccaccattgcgatt 29710929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 45715042 - 45714960
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgcca 90  Q
    |||||||| ||||||||||||||| |||| |||||||| | || |||| |||| ||||||||||||| |||||||||||||||    
T  45715042 tctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaagactcatcgcca 45714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 15825201 - 15825126
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactc 83  Q
    ||||||||||||||| |||||||| ||  ||||||||| | || ||||| ||| |||||||||||||| |||||||    
T  15825201 tctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacacatttcgttccaccacaaagactc 15825126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 19919154 - 19919193
Alignment:
Q  52 tgcaggcacgtttcgttccaccacgaagactcatcgccac 91  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  19919154 tgcaggcacctttcgttccaccacgaagactgatcgccac 19919193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 27846563 - 27846646
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccac 91  Q
    |||||||||||||||||||||||  |||| |||||||| | || ||||||||| |||||| | ||  ||||||||||| |||||    
T  27846563 tctcagttccattactgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgtccaactgcgaagactcattgccac 27846646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 17671976 - 17671935
Alignment:
Q  52 tgcaggcacgtttcgttccaccacgaagactcatcgccactg 93  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||    
T  17671976 tgcagacacctttcgttccaccatgaagactcatcgccactg 17671935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 20120394 - 20120329
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccacc 73  Q
    |||||||| |||||||||||||||||| | |||||||| | || ||||| ||| ||||||||||||    
T  20120394 tctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccacc 20120329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 24157345 - 24157373
Alignment:
Q  4 ttatctctcagttccattactgacttgag 32  Q
    |||||||||||||||||||||||||||||    
T  24157345 ttatctctcagttccattactgacttgag 24157373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 14255074 - 14255223
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgtt 107  Q
    |||||||| ||||| ||||||||| |||| |||||||  | ||||||||||||  ||||||||||||||||||||||||||| | || | ||||| | ||    
T  14255074 tctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactcatcgccgccgcgccggaagccatt 14255173  T
Q  108 accgattcactagagcattctctgccaccgttgcgattcaactgttctca 157  Q
    ||||   |||  |||||||||||||| ||||||| | ||||| |||||||    
T  14255174 accgtcacaccggagcattctctgccgccgttgctactcaaccgttctca 14255223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 4601523 - 4601612
Alignment:
Q  1 acattatctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgcc 89  Q
    ||||||| |||||||| ||||||||||||||| || | |||||||| | || ||||| ||| |||||||||||| |||||||| ||||||    
T  4601523 acattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagacttatcgcc 4601612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 26977787 - 26977709
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatc 86  Q
    |||| ||||||||||||||||||| |||| |||||||| | || ||||||||| |||||||||||| | |||| |||||    
T  26977787 tctcggttccattactgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatc 26977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 34273134 - 34273051
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccac 91  Q
    |||||||||| |||||||||||||  ||| |||||||| | ||||||||| || |||||| ||||| | ||||||| |||||||    
T  34273134 tctcagttccgttactgacttgagcattggagtgctaacgtgcttgcaggtacctttcgtcccaccgcaaagactcctcgccac 34273051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 12177433 - 12177368
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccacc 73  Q
    |||||||||||||||||||||||| || | |||||||| | || || |||||| ||||||||||||    
T  12177433 tctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccacc 12177368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 16299618 - 16299698
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgcc 89  Q
    |||||||| ||||||| ||||||  || | |||||||||| || ||||| |||||||||||||||| | |||||||||||||    
T  16299618 tctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aagactcatcgcc 16299698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 29217673 - 29217710
Alignment:
Q  120 gagcattctctgccaccgttgcgattcaactgttctca 157  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  29217673 gagcattctctgccgccgttgccattcaactgttctca 29217710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 16050441 - 16050357
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccact 92  Q
    |||||||||||| | ||||||||| |||| |||||||| | || |||||  || ||||  |||||| ||||||||||||||||||    
T  16050441 tctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcagatacctttctatccaccgcgaagactcatcgccact 16050357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 21098891 - 21098995
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacga-agactcatcgccactgcactggaagacgtta 108  Q
    |||||||||||||||||||||  || | |||||||||| || ||||| ||| |||||||||||| | | |||| | ||||| | |||| ||||| |||||    
T  21098891 tcagttccattactgacttgatcgtcggagtgctaatgtgcctgcagccacctttcgttccaccgcaacagacgcttcgccgccgcaccggaagccgtta 21098990  T
Q  109 ccgat 113  Q
    |||||    
T  21098991 ccgat 21098995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 16343628 - 16343504
Alignment:
Q  7 tctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacg 105  Q
    |||||||||||||||||||||||||| |||| |||||||| | || |||||||||  |||| |||||  ||||||||||||||||| |||| | ||  ||    
T  16343628 tctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctccactgcgaagactcatcgccaccgcacagaaatccg 16343529  T
Q  106 ttaccgattcactagagcattctct 130  Q
    ||||||||  || ||||||||||||    
T  16343528 ttaccgatataccagagcattctct 16343504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 22497347 - 22497490
Alignment:
Q  14 gttccattactgacttgagagttgaagtgctaatggct-tgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgttaccga 112  Q
    ||||||||||||||||||| || | |||||||| |  | |||| |||| |||||||||| | ||||||||||||||| | |||  ||||| | |||||||    
T  22497347 gttccattactgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttccatcgcgaagactcatcgccgccgcatcggaagccattaccga 22497446  T
Q  113 ttcactagagcattctctgccaccgttgcgattcaactgttctca 157  Q
      ||   |||||||||||||||||||||||| ||||  |||||||    
T  22497447 -ccatcggagcattctctgccaccgttgcgactcaatcgttctca 22497490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 30681037 - 30680956
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccac 91  Q
    |||||| ||||||||||||||| |||| |||||||| | | |||||| ||| |||||| ||||| |||||||||||| ||||    
T  30681037 tcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatctccac 30680956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 12424356 - 12424464
Alignment:
Q  7 tctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccac-gaagactcatcgccactgcactggaagac 104  Q
    |||||||||||||||||||||||||  || | |||||||| | || ||||||||| |||||||||||  | |||||||  ||||| | |||| |||| ||    
T  12424356 tctctcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccactgcagaagacttttcgccgccgcaccggaaaac 12424455  T
Q  105 gttaccgat 113  Q
    |||||||||    
T  12424456 gttaccgat 12424464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 31295579 - 31295654
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaa-tggcttgcaggcacgtttcgttccaccacgaagactc 83  Q
    |||||||| ||||||||||||||| || ||||||||||   || ||||||||  |||||||||||| |||||||||    
T  31295579 tctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaactttcgttccacctcgaagactc 31295654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 9292063 - 9292128
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccacc 73  Q
    ||||||||||| |||||||||||| |||   ||||||| | |||||||||||| ||||||||||||    
T  9292063 tctcagttccaatactgacttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccacc 9292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 13823421 - 13823486
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaa-tggcttgcaggcacgtttcgttccacc 73  Q
    |||||||||||||||||||||||  |||| |||||||| | ||||||  |||| ||||||||||||    
T  13823421 tctcagttccattactgacttgatcgttggagtgctaactagcttgccagcacctttcgttccacc 13823486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 34187346 - 34187261
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactg 93  Q
    |||||||||||||||||||||||| ||||  ||||||| | |  ||||| ||| |||||||||||| | |||||| ||| ||||||    
T  34187346 tctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttccaccgcaaagacttatcaccactg 34187261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 19305510 - 19305474
Alignment:
Q  10 ctcagttccattactgacttgagagttgaagtgctaa 46  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  19305510 ctcagttccattactgacttgagcgtttaagtgctaa 19305474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 20055571 - 20055477
Alignment:
Q  63 ttcgttccaccacgaagactcatcgccactgcactggaagacgttaccgattcactagagcattctctgccaccgttgcgattcaactgttctca 157  Q
    ||||||||||| |||||| |||||||| | | || ||||| |||||| ||||||   |||||||||||||||||||||||| |||||||||||||    
T  20055571 ttcgttccaccgcgaagattcatcgccgccgtaccggaagccgttactgattcatcggagcattctctgccaccgttgcgactcaactgttctca 20055477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 24677629 - 24677810
Alignment:
Q  7 tctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacg 105  Q
    ||||||||||||| ||||||||||||  ||| ||||||||   |||||||| |||  |||||| ||||  |||||||||||||||| ||||  |||| ||    
T  24677629 tctctcagttccaatactgacttgagcattggagtgctaacatgcttgcagccacccttcgtttcaccgtgaagactcatcgccaccgcaccagaagccg 24677728  T
Q  106 ttaccgattcactagagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggaggg 188  Q
    ||||||| ||||   ||||||||||   ||||||||||  |||| ||||||| | || | || ||||||||||||||||||||    
T  24677729 ttaccga-tcaccgaagcattctctaaaaccgttgcgacccaacggttctcaccgtatagataatttggcgctagaaggaggg 24677810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 17927748 - 17927831
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccac 91  Q
    ||||||||||||||||||||| || |||| |||||||| | || |||| |||| |||||| ||||||| |||| ||||||||||    
T  17927748 tctcagttccattactgacttaagcgttggagtgctaacgtgcatgcatgcacctttcgtcccaccacaaagagtcatcgccac 17927831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 23269291 - 23269210
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaa-tggcttgcaggcacgtttcgttccaccacgaagactcatcgccac 91  Q
    ||||||||||||||||||| || |||| |||||||| | || || || ||| |||||||||||| | |||||||||||||||    
T  23269291 tcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcgccac 23269210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 6928134 - 6928171
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaa 46  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  6928134 tctcagttccattactgacttgagtgttgaaatgctaa 6928171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 17319710 - 17319747
Alignment:
Q  52 tgcaggcacgtttcgttccaccacgaagactcatcgcc 89  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  17319710 tgcatgcacctttcgttccaccacgaagactcatcgcc 17319747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 15058082 - 15057990
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactgga 100  Q
    ||||| || ||||||| ||||| | |||| |||||||| | || |||| |||| |||||||||||||| ||||||||||| ||| | ||||||    
T  15058082 tctcaatttcattactaacttgtgcgttgtagtgctaacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcaccgtactgga 15057990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 379763 - 379583
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgtt 107  Q
    ||||||||||||||||||||| || ||  ||||||||| | || |  | |||| |||||||||||| ||||||||||||| | | | || |||||  |||    
T  379763 tctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccgcgaagactcatcgtcgccgtaccggaagctgtt 379664  T
Q  108 accgattcactagagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggaggg 188  Q
    || |   |||  |||||||||||||||| ||||| | ||||| ||||| | |  |||||||||||||||||||||||||||    
T  379663 acagtcacaccggagcattctctgccactgttgccactcaaccgttcttaccggacatatcatttggcgctagaaggaggg 379583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 25537452 - 25537303
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgtt 107  Q
    |||||||||||||||   |||||| |||| |||||||| | |||||||||||| |||||||||||| ||||||||| ||||| | |  |  |||  ||||    
T  25537452 tctcagttccattacaatcttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcttcgccgccgtgccagaaaccgtt 25537353  T
Q  108 accgattcactagagcattctctgccaccgttgcgattcaactgttctca 157  Q
    ||||   ||| |||||||||||| || ||||||| ||||||| |||||||    
T  25537352 accgtcacaccagagcattctcttccgccgttgccattcaaccgttctca 25537303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 22903140 - 22903103
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaa 46  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22903140 tctcagttccattactgacttgagcgttgaagtgctaa 22903103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 10961 - 11108
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgttac 109  Q
    |||||||||||| ||||||||| |||| |||||||| | || ||||  ||| ||| |||||||| |  ||| |||||||| | | || ||||| ||||||    
T  10961 tcagttccattattgacttgagcgttggagtgctaacgtgcctgcatacaccttttgttccaccgcagagattcatcgccgccgtaccggaagtcgttac 11060  T
Q  110 cgattcactagagcattctctgccaccgttgcgattcaactgttctca 157  Q
    ||| |||   ||||||||| |||||||||||||| ||||| |||||||    
T  11061 cgactcatcggagcattctttgccaccgttgcgactcaaccgttctca 11108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 5518595 - 5518440
Alignment:
Q  1 acattatctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactgg 99  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||| | |  ||||  ||| ||||||||||   |||||||| ||||||| ||||| |     
T  5518595 acattctctctcagttcaattactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttccattgcgaagacttatcgccattgcaccga 5518496  T
Q  100 aagacgttaccgattcactagagcattctctgccaccgttgcgattcaactgttct 155  Q
    |||  ||||| |||||||   |  ||||||| |||||| ||||| ||||| |||||    
T  5518495 aagctgttactgattcaccgaaagattctctaccaccgctgcgactcaaccgttct 5518440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 12683832 - 12683753
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcg 87  Q
    |||||||| ||||||| ||||||| |||| |||||||| | || ||||||||| |||||||||||| | |||||||||||    
T  12683832 tctcagtttcattactaacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 15742197 - 15742276
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcg 87  Q
    |||||||||||||||||||||||| ||   |||||||| | ||  |||||||| ||||| ||||||||||||||||||||    
T  15742197 tctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcatcg 15742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 13171125 - 13171089
Alignment:
Q  10 ctcagttccattactgacttgagagttgaagtgctaa 46  Q
    |||||||||||||||||||||||||||| ||||||||    
T  13171125 ctcagttccattactgacttgagagttggagtgctaa 13171089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 15514607 - 15514678
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagac 81  Q
    |||||||||||||||||||||| |||| |||||||| | || | |||||||  ||||||||||| |||||||    
T  15514607 tcagttccattactgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 17110747 - 17110680
Alignment:
Q  7 tctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccacc 73  Q
    ||||||| |||||||||||||||||  || | |||||||| | |||||||||||| ||||||||||||    
T  17110747 tctctcaattccattactgacttgatcgtcggagtgctaacgtgcttgcaggcacatttcgttccacc 17110680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 47253324 - 47253242
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaa-tggcttgcaggcacgtttcgttccaccacgaagactcatcgcca 90  Q
    |||||||||||||||||||||||| |||| ||||||||   || |||| |||| ||| || ||||| ||||||||| ||||||    
T  47253324 tctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttttgtcccaccccgaagactcgtcgcca 47253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 39879434 - 39879356
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatggct-tgcaggcacgtttcgttccaccacgaagactcatc 86  Q
    |||||||| ||||||||||||||| ||| ||||| ||| |  | ||||||||| ||||||||||||||||||| |||||    
T  39879434 tctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccaccacgaagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 16987136 - 16987316
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgtt 107  Q
    ||||| ||||||||||| |||||| ||   |||||||| | ||  ||| |||| |||||||||||| ||||||||||| ||| | | ||  |||| ||||    
T  16987136 tctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccgcgaagactcattgccgccgtaccagaagccgtt 16987235  T
Q  108 accgattcactagagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggaggg 188  Q
    | ||   |||  ||||||||||||||  |||| | ||||||| ||||||| |  ||| ||| |||||||||||||||||||    
T  16987236 agcgtcacaccggagcattctctgccctcgttaccattcaaccgttctcaccggacagatcgtttggcgctagaaggaggg 16987316  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 1979111 - 1978945
Alignment:
Q  7 tctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccacc-acgaagactcatcgccactgcactggaagac 104  Q
    |||||||||||||||||||||||||| ||   ||| |||| | |||||||||||| ||||||| |||| | || ||| | |||||||  ||| ||||| |    
T  1979111 tctctcagttccattactgacttgagcgtcagagtactaacgtgcttgcaggcacctttcgtttcaccaaagaggacgcgtcgccaccacaccggaagcc 1979012  T
Q  105 gttaccgattcactagagcattctctgccaccgttgcgattcaactgttctcaacatacatatcattt 172  Q
    |||||| | |||  |||||||||||| | |||| ||||| |||| ||||  || | ||||||||||||    
T  1979011 gttaccca-tcagcagagcattctctacaaccgctgcgactcaattgtttccaccgtacatatcattt 1978945  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 5925517 - 5925584
Alignment:
Q  7 tctctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccacc 73  Q
    |||||||||||||||||||||||||  |||| |||||||| | || ||||| ||| ||||||||||||    
T  5925517 tctctcagttccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccacc 5925584  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 12644832 - 12644753
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaa-tggcttgcaggcacgtttcgttccaccacgaagactcatcg 87  Q
    ||||||||||||||||||| |||| || | |||||||| | || |||| |||| ||||||||||||  ||||||||||||    
T  12644832 tctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcg 12644753  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 13292169 - 13292248
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatgg-cttgcaggcacgtttcgttccaccacgaagactcatcgcc 89  Q
    |||||| ||||||||||||||| |||  |||||||| |  | ||||| ||| |||| |||||||||||||||||||||||    
T  13292169 tcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaagactcatcgcc 13292248  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 21161281 - 21161211
Alignment:
Q  16 tccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatc 86  Q
    ||||||||||||||||| |||| |||||||| | || ||||| ||| |||||||||||| ||||||||||||    
T  21161281 tccattactgacttgagcgttggagtgctaacgtgcctgcagacac-tttcgttccaccgcgaagactcatc 21161211  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 5929057 - 5929094
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg 48  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  5929057 tcagttccattactgacttgagtgttggagtgctaatg 5929094  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 5863234 - 5863154
Alignment:
Q  9 tctcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgc 88  Q
    ||||||||| |||||||||||||| |||  |||||||| | ||||||| |||  |||||||| |||  |||||||||||||    
T  5863234 tctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgcacgcaaatttcgttctaccgtgaagactcatcgc 5863154  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 5925630 - 5925698
Alignment:
Q  120 gagcattctctgccaccgttgcgattcaactgttctcaacatacatatcatttggcgctagaaggaggg 188  Q
    ||||||||||| | ||||||| || ||||| ||||||| |  ||||||||||| | |||||||||||||    
T  5925630 gagcattctctacaaccgttgagactcaaccgttctcaccggacatatcatttagtgctagaaggaggg 5925698  T

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Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 21664 - 21797
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgttac 109  Q
    |||||| || |||||||||||| |||| |||||||| | ||  ||||||||  ||||||||||  |  ||||||||||||   | || ||||| ||||||    
T  21664 tcagtttcaatactgacttgagtgttggagtgctaacgtgcccgcaggcacacttcgttccactgcagagactcatcgccgtcgtaccggaagtcgttac 21763  T
Q  110 cgattcactagagcattctctgccaccgttgcga 143  Q
    |||||||    |||||||||||||||||||||||    
T  21764 cgattcatcgaagcattctctgccaccgttgcga 21797  T

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Target: scaffold0103 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 40841 - 40694
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccacgaagactcatcgccactgcactggaagacgttac 109  Q
    |||||||||| ||||||||||| |||| |||||||| | || |||| || | |||||||| |||||  |||||||||  | | |||| ||||   |||||    
T  40841 tcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttctaccacagagactcatcttcgccgcaccggaatttgttac 40742  T
Q  110 cgattcactagagcattctctgccaccgttgcgattcaactgttctca 157  Q
    ||| |||   ||||| ||||| |||||||||||| ||||| |||||||    
T  40741 cgactcatcggagcaatctcttccaccgttgcgactcaaccgttctca 40694  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 4470 - 4535
Alignment:
Q  11 tcagttccattactgacttgagagttgaagtgctaatg-gcttgcaggcacgtttcgttccaccac 75  Q
    |||||| ||||| ||||||||| |||| |||||||| | |||||||| ||| ||||||||||||||    
T  4470 tcagtttcattagtgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttccaccac 4535  T

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