View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9826_low_46 (Length: 221)

Name: NF9826_low_46
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9826_low_46
NF9826_low_46
[»] chr4 (1 HSPs)
chr4 (1-221)||(26072714-26072934)
[»] chr3 (2 HSPs)
chr3 (1-221)||(1670768-1670988)
chr3 (1-221)||(44271491-44271711)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26072714 - 26072934
Alignment:
Q  1 atcttgtacctaggatcaagataaacagctacaaacaacagattattgatattctcatcactccaatacttttcaaatttagctttcatagttaatgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26072714 atcttgtacctaggatcaagataaacagctacaaacaacagataattgatattctcatcactccaatacttttcaaatttagctttcatagtcaatgcca 26072813  T
Q  101 tatttttcaacacaacatcttcactttgaatccatgatgacaacacagtatgaattttcaccgactttctaaagaaacagttagcacttacatgtaaaga 200  Q
    | |||||||||||||||||||||| |||||||||||||||||   |||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  26072814 tgtttttcaacacaacatcttcaccttgaatccatgatgacagtgcagtatgaatcttcaccaactttctaaagaaacagttagcacttacatgtaaaga 26072913  T
Q  201 agaggaaaaagttagggtagc 221  Q
    |||||||||||||||||||||    
T  26072914 agaggaaaaagttagggtagc 26072934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1670988 - 1670768
Alignment:
Q  1 atcttgtacctaggatcaagataaacagctacaaacaacagattattgatattctcatcactccaatacttttcaaatttagctttcatagttaatgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1670988 atcttgtacctaggatcaagataaacagctacaaacaacagataattgatattctcatcactccaatacttttcaaatttagctttcatagtcaatgcca 1670889  T
Q  101 tatttttcaacacaacatcttcactttgaatccatgatgacaacacagtatgaattttcaccgactttctaaagaaacagttagcacttacatgtaaaga 200  Q
    | |||||||||||||||||||||| |||||||||||||||||   |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  1670888 tgtttttcaacacaacatcttcaccttgaatccatgatgacagtgcagtatgaatcttcaccaactttctaaagaaacagttagcacttatatgtaaaga 1670789  T
Q  201 agaggaaaaagttagggtagc 221  Q
    |||||||||||||||||||||    
T  1670788 agaggaaaaagttagggtagc 1670768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44271491 - 44271711
Alignment:
Q  1 atcttgtacctaggatcaagataaacagctacaaacaacagattattgatattctcatcactccaatacttttcaaatttagctttcatagttaatgcca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44271491 atcttgtacctaggatcaatataaacagctacaaacaacagataattgatattctcatcactccaatacttttcaaatttagctttcatagtcaatgcca 44271590  T
Q  101 tatttttcaacacaacatcttcactttgaatccatgatgacaacacagtatgaattttcaccgactttctaaagaaacagttagcacttacatgtaaaga 200  Q
    | |||||||||||||||||||||| |||||||||||||||||   |||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  44271591 tgtttttcaacacaacatcttcaccttgaatccatgatgacagtgcagtatgaatcttcaccaactttctaaagaaacagttagcacttacatgtaaaga 44271690  T
Q  201 agaggaaaaagttagggtagc 221  Q
    |||||||||||||||||||||    
T  44271691 agaggaaaaagttagggtagc 44271711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University