View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_6 (Length: 522)
Name: NF9826_low_6
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Original strand, 8361495 - 8361966
Alignment:
| Q |
17 |
aataatatatagtttgaaaatgtaaagtttatttgatgatatatttaagaaaatagtagtacctgagagggcaacgagatcttgcaaggaaagtcctctt |
116 |
Q |
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| T |
8361495 |
aataatatatagtttgaaaatgtaaagtttatttgatgat----ttaagaaaatagta---cctgagagggcaacgagatcttgcaaggaaagtcctctt |
8361587 |
T |
|
| Q |
117 |
tgagagaagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcagtagcctttgagattataccatcctttcttccttttg |
216 |
Q |
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| T |
8361588 |
tgagagaagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcagtagcctttgagattataccatcctttcttccttttg |
8361687 |
T |
|
| Q |
217 |
gtacttcccaatttggccctccggactaattaatgacatatatgacactcaaaaaatgtatt---aattgttactgcaacgtaacctttaaattatcata |
313 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||||||| ||||||||||| ||| |
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| T |
8361688 |
gtacttcccaatttggccctccggactaat----gacat----gacactcaaaaaatgtattgttatttgttactgcaac-----ctttaaattattata |
8361774 |
T |
|
| Q |
314 |
aaattcatatcatcatttgtgattgtgacttaccagagtgacagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaact |
413 |
Q |
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| T |
8361775 |
a--ttcatatcatcatttgtgattgtgacttaccagagtgacagcgtctctagcagcaagagccaaaatatcagcacaagacacgacccctggacaaact |
8361872 |
T |
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| Q |
414 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgctttattattctttccctttg |
510 |
Q |
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| T |
8361873 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgctttat---tctttccctttg |
8361966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 9058591 - 9058670
Alignment:
| Q |
414 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgcttt |
493 |
Q |
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||||| ||||||||||| || | |||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
9058591 |
gcttctaatgctttctttgcttcatcaatgacatagaatgcatgcaatgaaatgtttggcggtccatccttttctgcttt |
9058670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 493
Target Start/End: Complemental strand, 31748206 - 31748067
Alignment:
| Q |
354 |
acagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatg |
453 |
Q |
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||||| ||||| || |||| ||| ||||||||||||||||| || || || || ||| | ||||| ||||||||||| ||||||||||| | | | |||| |
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| T |
31748206 |
acagcatcccttgctgcaaaagctaagatatcagcacaagagactacaccagggcaagcagcttctaatgctttctttgcattatcaatgataaagaatg |
31748107 |
T |
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| Q |
454 |
catgcaatgatatgtttggaggtccatccttttctgcttt |
493 |
Q |
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| T |
31748106 |
catgcaaagatgcatttggtggtccatctttttctgcttt |
31748067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 400
Target Start/End: Complemental strand, 37111348 - 37111313
Alignment:
| Q |
365 |
agcagcaagagccaagatatcagcacaagacacgac |
400 |
Q |
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| T |
37111348 |
agcagcaagagccaaaatatcagcacaagacacgac |
37111313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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