View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9826_low_8 (Length: 504)
Name: NF9826_low_8
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 3699205 - 3698729
Alignment:
| Q |
19 |
caacttggtccaaatccctccttccactggaagtgatcttcctgccactgtgatacagaaaaaccaaagttaaaaacacatgatacaaagggacgatgca |
118 |
Q |
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| T |
3699205 |
caacttggtccaaatccctccttccactggaagtgatcttcctgccactgtgacacagaaaaacaaatgttaaaaacatatgatacaa-gggctgatgca |
3699107 |
T |
|
| Q |
119 |
gaa--------actatttctaa-gcaaatcctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaacaaatgttgttaaa |
209 |
Q |
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||| ||||||||||| ||||| || |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3699106 |
gaatagcataaactatttctaaagcaaagcc-aatcacaatataaatagaacaca--gatgcagaatagcatgaacaactgctaaacaaatgttgttaaa |
3699010 |
T |
|
| Q |
210 |
aaactacaagtgaacattaaaatagcttttcaatttgagttgcggcttagactaattctactgttactattctcttcattg----taacaaccatatttc |
305 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
3699009 |
aaattacaagtgaacattaaaatagcttttcaatttgagttgcggcttagactaattctactgttactattctcttcattgctggtaacaaccgtattgt |
3698910 |
T |
|
| Q |
306 |
aaactatagcaaactaacaaggataatgagttatttaccccttggtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3698909 |
aaactatagcaaactaacaaggataatgagttatttaccccttggtgtccatctcaataaggttcatgttctgcaactgttgaagaatgtggcgagcaat |
3698810 |
T |
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| Q |
406 |
ggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgcaccaac |
486 |
Q |
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| T |
3698809 |
ggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgcaccaac |
3698729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 3703953 - 3703777
Alignment:
| Q |
19 |
caacttggtccaaatccctccttccactggaagtgatcttcctgccactgtgatacagaaaaa-ccaaagttaaaaacacatgatacaaagggacgatgc |
117 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
3703953 |
caacttggtccaaatccctccttccgctggaagtgatcttcctgccactgtgatacaaaaaaaaccaatgttaaaaaca--tgatacaaagggacgatgc |
3703856 |
T |
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| Q |
118 |
agaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaac |
196 |
Q |
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| T |
3703855 |
agaaactatttctaagcaaatcctaatcacaatataaataaaacacacggatgcataatagcatgaacaactgctaaac |
3703777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 382 - 486
Target Start/End: Complemental strand, 3703777 - 3703673
Alignment:
| Q |
382 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctgacttccaccataaatcctctggaatgca |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3703777 |
ctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgactgccattcctctggcttccaccataaatcctctggaatgca |
3703678 |
T |
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| Q |
482 |
ccaac |
486 |
Q |
| |
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||||| |
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| T |
3703677 |
ccaac |
3703673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 3706928 - 3706871
Alignment:
| Q |
350 |
gtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatgg |
407 |
Q |
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|||||||| ||||| | || ||||||||||| |||||| |||||||| |||||||||| |
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| T |
3706928 |
gtgtccatttcaatgatgtccatgttctgcaactgttggagaatgtgacgagcaatgg |
3706871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 341 - 486
Target Start/End: Original strand, 15179378 - 15179523
Alignment:
| Q |
341 |
taccccttggtgtccatctcaataaggttcatgttctgcagctgttgaagaatgtggcgagcaatggaaccactgctcttgcagaaatgaggtgggcgac |
440 |
Q |
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||||||||||| |||||||| || ||||||||||||| || ||||||||||||||| |||||||| | ||||||||||||||||||||| || || |||| |
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| T |
15179378 |
taccccttggtatccatctcgatgaggttcatgttctccaactgttgaagaatgtgacgagcaatagcaccactgctcttgcagaaatggggaggacgac |
15179477 |
T |
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| Q |
441 |
tgccattcctctgacttccaccataaatcctctggaatgcaccaac |
486 |
Q |
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| T |
15179478 |
ttccattcctctgactcccaccgtaaatcctctggaatgaaccaac |
15179523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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