View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9826_low_9 (Length: 448)
Name: NF9826_low_9
Description: NF9826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9826_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 208 - 434
Target Start/End: Complemental strand, 1155492 - 1155264
Alignment:
| Q |
208 |
atgttttttccttt--acaacatccctaccacaccaccatcatcccataaatcactacaacaccacatgattaaatgtagaagtnnnnnnnnnnnnnnnn |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1155492 |
atgttttttccttctcacaacatccctaccacaccaccatcatcccataaatcactacaacaccacatgattaaatgcagaagtaataaaaacctaaaaa |
1155393 |
T |
|
| Q |
306 |
ngaaattcaatctgtaacttgataacaaaattgaatcgcaaaatatgtctctctcacttcaccaactctctcgcttctctattttcggtcgctaaaatat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
1155392 |
agaaattcaatctgtaacttgataacaaaattgaatcgcaaaatatgtctctctcacttcaccaactctctcgcttctatattttccgtcgctaaaatat |
1155293 |
T |
|
| Q |
406 |
atttgtatcgcttatctccatcacgatat |
434 |
Q |
| |
|
|| | |||||||||||||||||||||||| |
|
|
| T |
1155292 |
atctatatcgcttatctccatcacgatat |
1155264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 1155685 - 1155567
Alignment:
| Q |
17 |
tcaaaaatctagtaattcataaacttgccaagttgtatatcctccaaacagatataaaaattagggttaaatgtatttttgtcctccgtcatttagaaga |
116 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1155685 |
tcaaaaatctattaattcataaacttgcaaagttgtatatcctccaaactgatataaaaattagggttaaatgtattgttgtcctccgtcatttagaaga |
1155586 |
T |
|
| Q |
117 |
attcttatttatctccctt |
135 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1155585 |
attcttatttatctccctt |
1155567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University