View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9827_low_1 (Length: 404)
Name: NF9827_low_1
Description: NF9827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9827_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 44 - 392
Target Start/End: Complemental strand, 23945205 - 23944858
Alignment:
| Q |
44 |
ctttccactttaatccactcaccatgcaaagaatccggttcaccattaatacccaagatatcagttttgaacggaaactcctccatcattattcctgatt |
143 |
Q |
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| T |
23945205 |
ctttccactttaatccactcaccatgcaaagaatccggttcaccattaatacccaagatatcagttttgaacggaatctcctccatcattattcctgatt |
23945106 |
T |
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| Q |
144 |
tttcgtttttaccgttacccacattaaagttgttaccgttcttgtctgtaagcgtttcttccgcaacttccgatacggtggtcgtcggaacaaccactga |
243 |
Q |
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| T |
23945105 |
tttcgtttttaccgttacccacattaatgttgttatcgttcttgtctgtaagcgtttcttctgcaacttccgacacggtggtcgtcggaacaaccactga |
23945006 |
T |
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| Q |
244 |
ttctggttcaactgttaaagatttctgtttgggggcgcaatcctttaaagtatggccataacaaccacactgagtgcaaataacatgcaatcccttatac |
343 |
Q |
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| T |
23945005 |
ttctggttcaactgttaaaga-ttgtgtttgggggcgcaatcctttaaagtatggccataacaaccacactgagtgcaaataacatgcaatccctcatac |
23944907 |
T |
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| Q |
344 |
tgaacgtgataccactctccgttaattccaacttttcccaccacaggtt |
392 |
Q |
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| T |
23944906 |
tgaacgtgataccactctccgttaattccaacttttcccacaacaggtt |
23944858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 390
Target Start/End: Original strand, 49577633 - 49577729
Alignment:
| Q |
294 |
tatggccataacaaccacactgagtgcaaataacatgcaatcccttatactgaacgtgataccactctccgttaattccaacttttcccaccacagg |
390 |
Q |
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| T |
49577633 |
tatgaccataacagccacagtgagtgcaaatattgtgcaatccctcatattggacatgataccactcaccattgattcccactcttcccacaacagg |
49577729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 54817165 - 54817258
Alignment:
| Q |
299 |
ccataacaaccacactgagtgcaaataacatgcaatcccttatactgaacgtgataccactctccgttaattccaacttttcccaccacaggtt |
392 |
Q |
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| T |
54817165 |
ccataacaaccacactgagtgcaaataacatgcaaaccttcatactgaacatgataccattctccattgattcccacttttcctacaacaggtt |
54817258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 390
Target Start/End: Original strand, 24780142 - 24780238
Alignment:
| Q |
294 |
tatggccataacaaccacactgagtgcaaataacatgcaatcccttatactgaacgtgataccactctccgttaattccaacttttcccaccacagg |
390 |
Q |
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| T |
24780142 |
tatgaccataacagccacagtgagtgcaaatattgtgcaatccctcatattggacatgataccactcaccattgattcccactcttcccacaacagg |
24780238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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