View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9827_low_2 (Length: 335)
Name: NF9827_low_2
Description: NF9827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9827_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 32313861 - 32314185
Alignment:
| Q |
1 |
gcttgtatgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatat |
100 |
Q |
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| T |
32313861 |
gcttgtatgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatat |
32313960 |
T |
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| Q |
101 |
gaggttagtatctgatatttccctcatttatttcaccactgaactgattcacatataatttcttgtgtttaaatctatatgg------agnnnnnnnnat |
194 |
Q |
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| T |
32313961 |
gaggttagtatctgatatttccctcatttatttcaccactgaactgattcacatataatttcttgtgtttaaatctatatggtggtgttgttttttttaa |
32314060 |
T |
|
| Q |
195 |
tatacatgatatttctatttctattattaggctgcttcagccactgcaagcacagatcttccatcaacacatccaatccgtcttggacttgcactcaact |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32314061 |
tatacatgatatttctatttctattattaggctgcttccgccactgcaagcacagatcttccatcaacacatccaatccgtcttggacttgcactcaact |
32314160 |
T |
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| Q |
295 |
tctctgtcttctactatgagataat |
319 |
Q |
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||||||||||||||||||||||||| |
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| T |
32314161 |
tctctgtcttctactatgagataat |
32314185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 19415802 - 19415901
Alignment:
| Q |
217 |
attattaggctgcttcagccactgcaagcacagatcttccatcaacacatccaatccgtcttggacttgcactcaacttctctgtcttctactatgagat |
316 |
Q |
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| T |
19415802 |
attattaggctgcttccgccactgcaaacactgatcttccatcaacacatccaatccgtcttggacttgcactcaacttctctgtcttttattatgagat |
19415901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 19415613 - 19415716
Alignment:
| Q |
8 |
tgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatatgaggtta |
107 |
Q |
| |
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|||| |||||||||||| |||| || ||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||||| | ||| |||||| |
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| T |
19415613 |
tgattcaggaaaggtgattatttccggtatcttgctgagttcaagactgaccaagaaagaaaagaggctgctgagcagtcactgaaaggatacgaggttt |
19415712 |
T |
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| Q |
108 |
gtat |
111 |
Q |
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|||| |
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| T |
19415713 |
gtat |
19415716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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