View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9828_high_15 (Length: 229)
Name: NF9828_high_15
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9828_high_15 |
 | |
|
| [»] scaffold0771 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 20900241 - 20900443
Alignment:
| Q |
16 |
aagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttc |
115 |
Q |
| |
|
||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
20900241 |
aagaaggtatgactgttagcggcagtactgaagttttaaagccatgtcattacctattacaaaagctttgatacctgtttttatttctaacacgttcttc |
20900340 |
T |
|
| Q |
116 |
taatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtga |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900341 |
taatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtga |
20900440 |
T |
|
| Q |
211 |
aac |
213 |
Q |
| |
|
||| |
|
|
| T |
20900441 |
aac |
20900443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 13950009 - 13950191
Alignment:
| Q |
16 |
aagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttc |
115 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
13950009 |
aagaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttc |
13950108 |
T |
|
| Q |
116 |
taatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13950109 |
taatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
13950191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 13950199 - 13950238
Alignment:
| Q |
154 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13950199 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
13950238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 2149 - 2331
Alignment:
| Q |
16 |
aagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttc |
115 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
2149 |
aagaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttc |
2248 |
T |
|
| Q |
116 |
taatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2249 |
taatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
2331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 193
Target Start/End: Original strand, 2339 - 2378
Alignment:
| Q |
154 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2339 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
2378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University