View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9828_high_2 (Length: 607)
Name: NF9828_high_2
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9828_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 12 - 589
Target Start/End: Original strand, 2024167 - 2024744
Alignment:
| Q |
12 |
aagcataggaatcctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttatattgttcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2024167 |
aagcataggaatcctcaaaggtatgaattcaaaataaaacaatgtatatgtaactgcaaacatatccatgctttcctcataaaacatgttattttgttcc |
2024266 |
T |
|
| Q |
112 |
aacactaacctatccaaaaaataacaaaaagaattaatagaaccaattgtactaacctcaaacttgatgatgctcaaattgaataaaaatccctcttgca |
211 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2024267 |
aacaccaacctatccaaaaaataacaaaaagagttaatagaaccaattgtactaacctcaaacttgatgatgctcaaattgaataaaaatccctcttaca |
2024366 |
T |
|
| Q |
212 |
taacatgtagtagttccaactgactgatcactttcaggaaaagcttcgacacatcttcttttccattaaaatgctacattatgagattgaccataaaaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2024367 |
taacatgtagtagttccaactgactgatcactttcaggaaaagcttcgacacatcttcttttccattaaaatgctacattatgagattgaccgtaaaaaa |
2024466 |
T |
|
| Q |
312 |
ctaataacaaaaatgagataagcatgaaagagctaccttttcattgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaaca |
411 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024467 |
ataataacagaaatgagataagcatgaaagagctaccttttcatcgagcaggagcatgtgcagacttccctcctcggctggattcgtatggtcaggaaca |
2024566 |
T |
|
| Q |
412 |
ctccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagctaaaacagaaa |
511 |
Q |
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| T |
2024567 |
ctccattggcgaattactctagccgtcaatgccagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagctaaaacagaaa |
2024666 |
T |
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| Q |
512 |
cataaacatgcattattactttacattcatgaaaaattgcaaatcatgtgtagtgtttgtagaaatgagcattttctt |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2024667 |
cataaacatgcattattactttacattcatgaaaaattgcaaatcatgtgtagtgtttgtagaaatgagcattttctt |
2024744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 533
Target Start/End: Original strand, 23319814 - 23319944
Alignment:
| Q |
403 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagcta |
502 |
Q |
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| T |
23319814 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattccagccacagtagtcatcgttggtgctgtaacta |
23319913 |
T |
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| Q |
503 |
aaacagaaacataaacatgcattattacttt |
533 |
Q |
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| T |
23319914 |
aaacacgaagataaacatgaattagtacttt |
23319944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 533
Target Start/End: Original strand, 23329981 - 23330111
Alignment:
| Q |
403 |
tcaggaacactccataggcgaattactctagccgtcaatgtcagatcaatattcccacacttaattccttccacacgagtcatctttggagccacagcta |
502 |
Q |
| |
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|||||||||||||| ||| ||||||| || | ||||||| ||||||| ||||||||||||| ||||| ||||| ||||||| |||| || | ||| |
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| T |
23329981 |
tcaggaacactccacaggtgaattaccctgactgtcaatgccagatcagtattcccacacttgattccagccacagtagtcatcgttggtgctgtaacta |
23330080 |
T |
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| Q |
503 |
aaacagaaacataaacatgcattattacttt |
533 |
Q |
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||||| || ||||||||| |||| |||||| |
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| T |
23330081 |
aaacacgaagataaacatgaattagtacttt |
23330111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 22005350 - 22005407
Alignment:
| Q |
162 |
actaacctcaaacttgatgatgctcaaattgaataaaaatccctcttgcataacatgt |
219 |
Q |
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||||||||||||||||||| |||||||| ||||| ||| | | |||||| |||||||| |
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| T |
22005350 |
actaacctcaaacttgatgttgctcaaactgaatgaaagttcatcttgcttaacatgt |
22005407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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