View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9828_high_6 (Length: 419)
Name: NF9828_high_6
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9828_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 39957192 - 39956982
Alignment:
| Q |
1 |
cgaggcttggatgggggaagaatttcacaaaaataccctaattaagtaccacgaacaaaaaattacgtcaagcttcttaggttaaagacacttaaaagta |
100 |
Q |
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| T |
39957192 |
cgaggcttggatgggggaagaatttcacaaaaataccctaattaagtaccacgaacaaaaaattacgtcaagcttcttaggttaaagacacttaaatgta |
39957093 |
T |
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| Q |
101 |
gtagtgatttacaatataaaaaagtaacgctttttaaaaatgataaatgcacaatttttaagccgtaaattatatatattgaatcctttcaaaaagtggc |
200 |
Q |
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| T |
39957092 |
gtagtgatttacaatattaaaaagtaacgctttttaaaaatgataaatgcacaatttttaagacgtaaattatataaattgaatccttt-aacaagtggc |
39956994 |
T |
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| Q |
201 |
ttaagttagcaa |
212 |
Q |
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|||||||||||| |
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| T |
39956993 |
ttaagttagcaa |
39956982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 298 - 397
Target Start/End: Complemental strand, 39956867 - 39956767
Alignment:
| Q |
298 |
attcagtgaacaatgaatcatatagatgcaagatgtcatga-gggtgcagctttttgttgacattgatgtagcagcaaaagacgttaaaatatgacctca |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956867 |
attcagtgaacaatgaatcatatagatgcaagatgtcatgaagggtgcagctttttgttgacattgatgtagcagcaaaagacgttaaaatatgacctca |
39956768 |
T |
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| Q |
397 |
t |
397 |
Q |
| |
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| |
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| T |
39956767 |
t |
39956767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 39956955 - 39956892
Alignment:
| Q |
234 |
ggttaaaaaacaaaggaaaaccaaatttgatgtgataaaggaaaagacatgaattgaacctagca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
39956955 |
ggttaaaaaacaaaggaaaaccaaatttgatgtgataaaggaaaagacgtgaa-tgaacctagca |
39956892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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