View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9828_high_8 (Length: 312)
Name: NF9828_high_8
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9828_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 300
Target Start/End: Original strand, 25587465 - 25587743
Alignment:
| Q |
22 |
aatggtgtattcttcacttccacttccagtactctcattccctttcattcccaaaaggaggccaaaatgcttttctgtaagcccttcacttttttcattt |
121 |
Q |
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| T |
25587465 |
aatggtgtattcttcacttccacttccagtactctcattccctttcattcccaaaaggaggccaaaatgcttttctgtaagcccttcacttttttcattt |
25587564 |
T |
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| Q |
122 |
acttattttcctatcacattgcttcttaattttcgaagcaataaaatggtgtatgcttcactttcactatcacttctcatcttcattttcctttgcaaac |
221 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25587565 |
acttattttcctatcacattgcttcttaattttggaagcaataaaatggtgtatgcttcactttcactatcacttctcatcttcattttcctttgcaaac |
25587664 |
T |
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| Q |
222 |
cattcctctcagctggtcccccttcacttcctatttaatttttatgcattttctaaataaaaatttccattgtttcctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25587665 |
cattcctctcagctggtcccccttcacttcctatttaatttttatgcattttctaaataaaaatttccattgtttcctt |
25587743 |
T |
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