View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9828_low_10 (Length: 355)
Name: NF9828_low_10
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9828_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 36808341 - 36808677
Alignment:
| Q |
1 |
agaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagtataagaatgaggca |
100 |
Q |
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| T |
36808341 |
agaacccgttgaagatcttgtgacgtacttctctaagcatgacgattccgactttccatattacggcaaacgtggtaattttgagtataagaatgaggca |
36808440 |
T |
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| Q |
101 |
tataggaagcttgaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctaggagtgaacaaaattgaattg |
200 |
Q |
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| T |
36808441 |
tataggaagc--aaggctcaaattcaaatatataaggagaagtctcacaacctaagtgtacgcatctatctaactgctaggagtgaacaaaattgaattg |
36808538 |
T |
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| Q |
201 |
caannnnnnnnattgatggtgaatttagctttggaaaagattttgatttacatgaaaacctttgtccattacatggtatttatattttgaaatcatatac |
300 |
Q |
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| T |
36808539 |
caattttttttattgatggtgaatttagctttggaaaagattttgatttacatgaaaacctttgtccattacatggtatttatattttgaaatcatatac |
36808638 |
T |
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| Q |
301 |
tggcttgcacaagttttggtgatttgagaaattttattt |
339 |
Q |
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| T |
36808639 |
tggcttgcacaagttttggtgatttgagaaattttattt |
36808677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 36512438 - 36512295
Alignment:
| Q |
29 |
ttctctaagcatgacgattccgactttccttattacggcaaatgtggtaattttgagtataagaatgaggcatataggaagcttgaggctcaaattcaaa |
128 |
Q |
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| T |
36512438 |
ttctctaagtatgacgattccgactttccttatcacgtcaaaagtggtaattttgagtataagaatgaggcatataggctgcttgaggctcaaattcaaa |
36512339 |
T |
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| Q |
129 |
tatataaggagaagtctcacaacctaagtgtacgcatctatcta |
172 |
Q |
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| T |
36512338 |
tctataaggagaagtctcgcaacctaagtgtacgcatctatcta |
36512295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 36511456 - 36511378
Alignment:
| Q |
261 |
tttgtccattacatggtatttatattttgaaatcatatactggcttgcacaagttttggtgatttgagaaattttattt |
339 |
Q |
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| T |
36511456 |
tttgtccattacatggtatttatattttgaaatcacatgttgacatgcacaagttttggtgatttgagaaattttattt |
36511378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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