View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9828_low_12 (Length: 311)

Name: NF9828_low_12
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9828_low_12
NF9828_low_12
[»] chr3 (8 HSPs)
chr3 (10-294)||(10358863-10359147)
chr3 (10-294)||(9995402-9995686)
chr3 (10-290)||(48388031-48388309)
chr3 (123-294)||(10131188-10131359)
chr3 (10-157)||(10216586-10216733)
chr3 (10-157)||(10105438-10105585)
chr3 (10-157)||(10226198-10226345)
chr3 (14-157)||(10220108-10220252)
[»] chr5 (3 HSPs)
chr5 (10-157)||(26796057-26796204)
chr5 (14-157)||(26799579-26799722)
chr5 (14-157)||(26807128-26807272)
[»] chr1 (1 HSPs)
chr1 (10-70)||(3765792-3765852)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 10359147 - 10358863
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10359147 gaataaatggagaattgctgtatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtacaatatttcttttt 10359048  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggc 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359047 cgtaatttacatttcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggc 10358948  T
Q  210 ttcagaacgaaactcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctccc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358947 ttcagaacgaaactcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctccc 10358863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 294
Target Start/End: Original strand, 9995402 - 9995686
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||    
T  9995402 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagacgctttcgtgaatgtaagtacaatatttcttttt 9995501  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995502 cgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggc 9995601  T
Q  210 ttcagaacgaaactcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctccc 294  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995602 ttcagaacaaaactcgtatacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctccc 9995686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 48388309 - 48388031
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||| |||||||||||||    
T  48388309 gaataaatggagaattgctctatctaactggtgactggttccactcatctaccaccatgaacaagactctttcgcaatcgtaagtacaatatttcttttt 48388210  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggc 209  Q
     |||||| |||||||||||||||||||||| ||||||||||||||||| |||||    ||||||| |||  | |||||||| |   ||||||||||||||    
T  48388209 tgcaattcacatttcaatgaagaactctgattatgatatcaacattctcactca----aatgttttggaacttgacaccaaaagcttatttgtttcaggc 48388114  T
Q  210 ttcagaacgaaactc--gtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttc 290  Q
    ||||||| |||||||  |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  48388113 ttcagaatgaaactcatgtgtacactgaagaaaatgctagattcattcctggacacggtgtggcttatcgtctctgatgtttc 48388031  T

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Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 123 - 294
Target Start/End: Original strand, 10131188 - 10131359
Alignment:
Q  123 tcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttaggacatcgacaccaacattatatttgtttcaggcttcagaacgaaac 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  10131188 tcaatgaagaactctgactatgatatcaacattctaactcacttaaatgtttagaacatcgacaccaacattatatttgtttcaggcttcataacgaaac 10131287  T
Q  223 tcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctccc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10131288 tcgtgtacaccgaagaaaatactagattcattcctggacacggtgtggcttattgtctctgatgtttctccc 10131359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 10216586 - 10216733
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  10216586 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaatactctttcgcgaatgtaagtacaatatttcttttt 10216685  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10216686 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 10216733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 10105438 - 10105585
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  10105438 gaataaatggagaattgctctatctaactggtgactggtttcattcatctaccaccatgaacaatactctttcgcgaatgtaagtacaatatttcttttt 10105537  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10105538 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 10105585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 10226198 - 10226345
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||    
T  10226198 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaatactctttcgcgaatgtaagtacaacatttcttttt 10226297  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  10226298 cacaatttacatttcaatgaagaactctgactatgatatcaacattct 10226345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 10220108 - 10220252
Alignment:
Q  14 aaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttc-tttttcgc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||    
T  10220108 aaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaatactctttcgcgaatgtcagtacaatatttcttttttcgc 10220207  T
Q  113 aatttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10220208 aatttacatttcaatgaagaactctgactatgatatcaacattct 10220252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 26796057 - 26796204
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttcttttt 109  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  26796057 gaataaatggagaattgctctatctaactggtgactggtttcattcatctaccaccatgaacaatactctttcgcgaatgtaagtacaatatttcttttt 26796156  T
Q  110 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26796157 cgcaatttacatttcaatgaagaactctgactatgatatcaacattct 26796204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 26799579 - 26799722
Alignment:
Q  14 aaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttctttttcgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  26799579 aaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaatactctttcgcgaatgtaagtacaatatttctttttcgca 26799678  T
Q  114 atttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26799679 atttacatttcaatgaagaactctgactatgatatcaacattct 26799722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 26807128 - 26807272
Alignment:
Q  14 aaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaagactctttcgcgaatgtaagtagaatatttc-tttttcgc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||    
T  26807128 aaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaacaatactctttcgcgaatgtcagtacaatatttcttttttcgc 26807227  T
Q  113 aatttacatttcaatgaagaactctgactatgatatcaacattct 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26807228 aatttacatttcaatgaagaactctgactatgatatcaacattct 26807272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 3765852 - 3765792
Alignment:
Q  10 gaataaatggagaattgctctatctaactggtgactggttccattcatctaccaccatgaa 70  Q
    ||||||| ||| |||||||||| |||  |||||  ||||||||||||||||||| ||||||    
T  3765852 gaataaaaggaaaattgctctacctagatggtgcttggttccattcatctaccatcatgaa 3765792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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