View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9828_low_16 (Length: 242)

Name: NF9828_low_16
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9828_low_16
NF9828_low_16
[»] chr5 (3 HSPs)
chr5 (52-229)||(4796301-4796473)
chr5 (34-177)||(31973469-31973613)
chr5 (176-229)||(904742-904795)
[»] chr2 (3 HSPs)
chr2 (111-233)||(39583179-39583305)
chr2 (176-226)||(36901204-36901254)
chr2 (176-226)||(36901438-36901488)
[»] chr7 (5 HSPs)
chr7 (111-234)||(32000818-32000937)
chr7 (109-233)||(30898975-30899095)
chr7 (176-233)||(10406571-10406628)
chr7 (109-138)||(41389305-41389334)
chr7 (173-226)||(42441077-42441130)
[»] chr4 (5 HSPs)
chr4 (196-235)||(43805555-43805594)
chr4 (181-235)||(23311453-23311507)
chr4 (30-138)||(48046277-48046385)
chr4 (192-233)||(20726824-20726865)
chr4 (110-138)||(22870653-22870681)
[»] chr8 (2 HSPs)
chr8 (34-177)||(30590373-30590517)
chr8 (176-229)||(39590759-39590812)
[»] chr3 (1 HSPs)
chr3 (34-224)||(51917805-51917990)
[»] chr1 (3 HSPs)
chr1 (109-138)||(51188890-51188919)
chr1 (178-226)||(31789413-31789461)
chr1 (34-138)||(51515639-51515743)
[»] chr6 (1 HSPs)
chr6 (178-226)||(18286662-18286710)


Alignment Details
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 4796301 - 4796473
Alignment:
Q  52 catttggggtgccttcatcacagcctttaacacttttattctgttggatgtaaaagaggtggatttagtcccacattgcttagag--atggcctatgtaa 149  Q
    |||||||| |||||||||  ||||||  ||||| || ||| |||||| ||| || | ||||||||||||| ||||||||||||||  ||||| | ||||     
T  4796301 catttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaagg-ggtggatttagtcacacattgcttagagatatggcatgtgtag 4796399  T
Q  150 tccttataaagcttgggcagccctcaccctcaccttacaagccagttttataatgatgatttacgcccaatataaaatct 229  Q
    |  ||||||||| |||||||      ||||||||||||||||  ||||| ||| ||||| ||| ||||||||||||||||    
T  4796400 tgtttataaagcatgggcag------ccctcaccttacaagcgggttttgtaaggatgagttaggcccaatataaaatct 4796473  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 31973613 - 31973469
Alignment:
Q  34 ctagctgcgtaattgtgccatttggggtgccttcatcacagcctttaacacttttattctgttggatgtaaaagaggtggatttagtcccacattgctta 133  Q
    ||||| || |||||| | |||||| | |||||| ||  ||||||  ||||| || ||| |||||| ||| |||| |||||||||||||||||||||  ||    
T  31973613 ctagccgcctaattgaggcatttgagttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaag-ggtggatttagtcccacattgtcta 31973515  T
Q  134 gagat--ggcctatgtaatccttataaagcttgggcagccctcacc 177  Q
    |||||  |||||||||| |  |||||||| ||||||||||||||||    
T  31973514 gagatatggcctatgtagtgtttataaagtttgggcagccctcacc 31973469  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 904795 - 904742
Alignment:
Q  176 ccctcaccttacaagccagttttataatgatgatttacgcccaatataaaatct 229  Q
    ||||||||||||||||| ||||| ||| ||||| | | ||||||||||||||||    
T  904795 ccctcaccttacaagccggttttgtaaggatgagtcaggcccaatataaaatct 904742  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 233
Target Start/End: Original strand, 39583179 - 39583305
Alignment:
Q  111 tggatttagtcccacattgcttagagat--ggcctatgtaatccttataaagcttgggcagccctca--ccctcaccttacaagccagttttataatgat 206  Q
    |||||||||||||||||||| || ||||  |||||||||| | |||| |||| ||||||||||||||  || ||| || ||||||| ||||| ||  |||    
T  39583179 tggatttagtcccacattgcctatagatatggcctatgtagtgcttacaaagtttgggcagccctcagcccgtcatctaacaagccggttttgtagggat 39583278  T
Q  207 gatttacgcccaatataaaatctaaga 233  Q
    || ||| ||||||||||||| ||||||    
T  39583279 gagttaggcccaatataaaacctaaga 39583305  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 36901204 - 36901254
Alignment:
Q  176 ccctcaccttacaagccagttttataatgatgatttacgcccaatataaaa 226  Q
    |||||||||||||||||| |||| ||| ||||| ||| |||||||||||||    
T  36901204 ccctcaccttacaagccatttttgtaaggatgagttaggcccaatataaaa 36901254  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 36901438 - 36901488
Alignment:
Q  176 ccctcaccttacaagccagttttataatgatgatttacgcccaatataaaa 226  Q
    |||||||||||||||||| |||| ||| ||||| ||| |||||||||||||    
T  36901438 ccctcaccttacaagccatttttgtaaggatgagttaggcccaatataaaa 36901488  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 32000818 - 32000937
Alignment:
Q  111 tggatttagtcccacattgcttagagat--ggcctatgtaatccttataaagcttgggcagccctcaccctcaccttacaagccagttttataatgatga 208  Q
    |||||||||||||||| |||||||||||  | ||| |||| |  |||||||||||||||||      ||||||||||||||||| ||||| ||| |||||    
T  32000818 tggatttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaagcttgggcag------ccctcaccttacaagccggttttgtaaggatga 32000911  T
Q  209 tttacgcccaatataaaatctaagaa 234  Q
     ||| |||  ||||||||||||||||    
T  32000912 gttaggcctgatataaaatctaagaa 32000937  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 30899095 - 30898975
Alignment:
Q  109 ggtggatttagtcccacattgcttagagatgg--cctatgtaatccttataaagcttgggcagccctcaccctcaccttacaagccagttttataatgat 206  Q
    |||||||||||||||||||||||||||||| |  | | |||| |   |||||||||||||||||||||| |      ||||||||| ||||| ||  |||    
T  30899095 ggtggatttagtcccacattgcttagagataggtcatgtgtagtgtatataaagcttgggcagccctcatc------ttacaagccggttttttacggat 30899002  T
Q  207 gatttacgcccaatataaaatctaaga 233  Q
    || ||| ||||||||||||||||||||    
T  30899001 gagttaggcccaatataaaatctaaga 30898975  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 10406628 - 10406571
Alignment:
Q  176 ccctcaccttacaagccagttttataatgatgatttacgcccaatataaaatctaaga 233  Q
    |||||||| |||||||  ||||| ||| ||||| ||| ||||||||||||||||||||    
T  10406628 ccctcaccgtacaagctggttttgtaaggatgagttaggcccaatataaaatctaaga 10406571  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 41389305 - 41389334
Alignment:
Q  109 ggtggatttagtcccacattgcttagagat 138  Q
    ||||||||||||||||||||||||||||||    
T  41389305 ggtggatttagtcccacattgcttagagat 41389334  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 42441077 - 42441130
Alignment:
Q  173 tcaccctcaccttacaagccagttttataatgatgatttacgcccaatataaaa 226  Q
    ||||||||||||||| ||||| |||| ||| ||||| ||| |||||||||||||    
T  42441077 tcaccctcaccttactagccaattttgtaaggatgagttaagcccaatataaaa 42441130  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 43805594 - 43805555
Alignment:
Q  196 tttataatgatgatttacgcccaatataaaatctaagaaa 235  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43805594 tttataatgatgatttacgcccaatataaaatctaagaaa 43805555  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 23311507 - 23311453
Alignment:
Q  181 accttacaagccagttttataatgatgatttacgcccaatataaaatctaagaaa 235  Q
    |||||||||||| ||||| ||| ||||| ||| ||||||||||||||||||||||    
T  23311507 accttacaagccggttttgtaaggatgacttaggcccaatataaaatctaagaaa 23311453  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 48046277 - 48046385
Alignment:
Q  30 ccctctagctgcgtaattgtgccatttggggtgccttcatcacagcctttaacacttttattctgttggatgtaaaagaggtggatttagtcccacattg 129  Q
    ||||||||| || |||||||  |||| ||| |||||||||  || |||  ||||| || | | |||||| ||| |||| |||||||||||||||||||||    
T  48046277 ccctctagccgcctaattgtagcattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtcccacattg 48046376  T
Q  130 cttagagat 138  Q
    | |||||||    
T  48046377 cctagagat 48046385  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 20726865 - 20726824
Alignment:
Q  192 cagttttataatgatgatttacgcccaatataaaatctaaga 233  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||    
T  20726865 cagttttataaggatgagttaggcccaatataaaatctaaga 20726824  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 22870653 - 22870681
Alignment:
Q  110 gtggatttagtcccacattgcttagagat 138  Q
    |||||||||||||||||||||||||||||    
T  22870653 gtggatttagtcccacattgcttagagat 22870681  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 30590373 - 30590517
Alignment:
Q  34 ctagctgcgtaattgtgccatttggggtgccttcatcacagcctttaacacttttattctgttggatgtaaaagaggtggatttagtcccacattgctta 133  Q
    |||||||| ||| |||  |||||||| |||||||||  ||||||  ||||| || ||| |||| | ||| || | |||||||||||||||||||||| ||    
T  30590373 ctagctgcctaactgtagcatttgggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaagg-ggtggatttagtcccacattgcata 30590471  T
Q  134 gagat--ggcctatgtaatccttataaagcttgggcagccctcacc 177  Q
    || ||  ||| | |||| |  |||||||||||||||||||||||||    
T  30590472 gatatatggcatgtgtagtgtttataaagcttgggcagccctcacc 30590517  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 39590759 - 39590812
Alignment:
Q  176 ccctcaccttacaagccagttttataatgatgatttacgcccaatataaaatct 229  Q
    |||||||||||||| |||||||| ||| ||||||||| ||| ||| ||||||||    
T  39590759 ccctcaccttacaaaccagttttgtaaggatgatttaggcctaatgtaaaatct 39590812  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 51917805 - 51917990
Alignment:
Q  34 ctagctgcgtaattgtgccatttggggtgccttcatcacagcctttaacacttttattctgttggatgtaaaagaggtggatttagtcccacattgctta 133  Q
    |||||||| ||||||   |||||||| |||||||||  || |||| ||| | || ||| |||||  ||| |||| |||||||||||||| ||||||| ||    
T  51917805 ctagctgcctaattgaagcatttgggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaag-ggtggatttagtcctacattgccta 51917903  T
Q  134 gag--atggcctatgtaatccttataaagcttgggcagccctcaccctcaccttacaagccagttttataatgatgatttacgcccaatataa 224  Q
    |||  ||||| |||||| |  |||||||||||||||      | |||||| |||||||||||||||| ||| ||||| ||  |||||||||||    
T  51917904 gagatatggcatatgtagtgtttataaagcttgggc------cgccctcagcttacaagccagttttgtaaggatgagttgggcccaatataa 51917990  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 51188919 - 51188890
Alignment:
Q  109 ggtggatttagtcccacattgcttagagat 138  Q
    ||||||||||||||||||||||||||||||    
T  51188919 ggtggatttagtcccacattgcttagagat 51188890  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 31789413 - 31789461
Alignment:
Q  178 ctcaccttacaagccagttttataatgatgatttacgcccaatataaaa 226  Q
    ||||||||||||||| ||||| ||| ||||| ||| |||||||||||||    
T  31789413 ctcaccttacaagccggttttgtaaggatgaattaggcccaatataaaa 31789461  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 51515639 - 51515743
Alignment:
Q  34 ctagctgcgtaattgtgccatttggggtgccttcatcacagcctttaacacttttattctgttggatgtaaaagaggtggatttagtcccacattgctta 133  Q
    ||||| || |||||||| |||||||  |||||||||  | ||||  ||||| || ||| |||||| ||| |||| |||||||||||||| ||||| | ||    
T  51515639 ctagccgcctaattgtggcatttggattgccttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggggtggatttagtccgacattaccta 51515738  T
Q  134 gagat 138  Q
    |||||    
T  51515739 gagat 51515743  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 18286662 - 18286710
Alignment:
Q  178 ctcaccttacaagccagttttataatgatgatttacgcccaatataaaa 226  Q
    |||||||||||||||| |||| ||| ||||| ||| |||||||||||||    
T  18286662 ctcaccttacaagccaattttgtaaggatgagttaggcccaatataaaa 18286710  T

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