View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9828_low_2 (Length: 670)

Name: NF9828_low_2
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9828_low_2
NF9828_low_2
[»] chr4 (31 HSPs)
chr4 (18-587)||(55240148-55240728)
chr4 (321-458)||(54137192-54137332)
chr4 (306-445)||(23564466-23564605)
chr4 (298-404)||(582248-582354)
chr4 (291-444)||(8836953-8837107)
chr4 (335-553)||(36165464-36165693)
chr4 (435-523)||(11784977-11785065)
chr4 (491-573)||(23564540-23564622)
chr4 (480-573)||(9928957-9929051)
chr4 (317-444)||(23564195-23564318)
chr4 (500-553)||(18523020-18523073)
chr4 (437-554)||(36165892-36166009)
chr4 (298-402)||(18523164-18523268)
chr4 (307-444)||(36165367-36165508)
chr4 (355-444)||(2346305-2346394)
chr4 (437-562)||(23564275-23564400)
chr4 (501-573)||(8837026-8837098)
chr4 (237-277)||(53090085-53090125)
chr4 (333-395)||(9706232-9706293)
chr4 (240-274)||(19680584-19680618)
chr4 (240-273)||(2346182-2346215)
chr4 (298-394)||(9928934-9929031)
chr4 (500-553)||(18523215-18523268)
chr4 (237-270)||(18523310-18523343)
chr4 (237-270)||(23564169-23564202)
chr4 (237-278)||(25050087-25050128)
chr4 (237-274)||(36165337-36165374)
chr4 (237-278)||(37927660-37927701)
chr4 (322-363)||(55241497-55241538)
chr4 (237-277)||(36165767-36165807)
chr4 (237-273)||(41389516-41389552)
[»] chr5 (14 HSPs)
chr5 (314-465)||(42042130-42042281)
chr5 (500-573)||(8402114-8402187)
chr5 (406-477)||(10668462-10668532)
chr5 (298-395)||(8401961-8402058)
chr5 (237-274)||(8402225-8402262)
chr5 (322-389)||(12835809-12835876)
chr5 (500-573)||(8401985-8402058)
chr5 (298-363)||(28431955-28432020)
chr5 (298-390)||(8402095-8402187)
chr5 (298-369)||(6423995-6424066)
chr5 (334-393)||(33408153-33408212)
chr5 (320-369)||(12867663-12867712)
chr5 (237-270)||(31540323-31540356)
chr5 (489-549)||(6423984-6424044)
[»] chr3 (24 HSPs)
chr3 (298-444)||(20490928-20491075)
chr3 (489-573)||(50196900-50196984)
chr3 (354-544)||(50197017-50197207)
chr3 (237-289)||(20982799-20982851)
chr3 (341-395)||(22312323-22312377)
chr3 (298-364)||(30130780-30130846)
chr3 (500-562)||(30135504-30135566)
chr3 (500-562)||(30141633-30141695)
chr3 (500-562)||(30145055-30145117)
chr3 (489-562)||(30130784-30130857)
chr3 (298-364)||(30135500-30135566)
chr3 (298-364)||(30141629-30141695)
chr3 (298-364)||(30145051-30145117)
chr3 (237-278)||(331579-331620)
chr3 (489-553)||(20490917-20490982)
chr3 (237-270)||(20982671-20982704)
chr3 (237-270)||(20995554-20995587)
chr3 (237-278)||(22312204-22312245)
chr3 (233-278)||(40836677-40836722)
chr3 (349-445)||(20995595-20995690)
chr3 (435-554)||(11047444-11047563)
chr3 (379-445)||(20982741-20982807)
chr3 (315-369)||(50196928-50196982)
chr3 (237-270)||(20982191-20982224)
[»] chr2 (8 HSPs)
chr2 (323-458)||(36201946-36202081)
chr2 (299-444)||(43829730-43829875)
chr2 (434-527)||(36053556-36053649)
chr2 (356-400)||(27492218-27492262)
chr2 (500-562)||(18203095-18203157)
chr2 (500-562)||(30841546-30841608)
chr2 (484-541)||(43829620-43829677)
chr2 (501-550)||(43829826-43829875)
[»] chr1 (15 HSPs)
chr1 (315-402)||(10199964-10200051)
chr1 (298-444)||(49293023-49293169)
chr1 (333-465)||(30602442-30602574)
chr1 (509-553)||(3371665-3371709)
chr1 (500-548)||(12178099-12178147)
chr1 (301-365)||(31061253-31061317)
chr1 (310-364)||(35536769-35536823)
chr1 (323-389)||(40883985-40884051)
chr1 (489-562)||(10645792-10645865)
chr1 (235-276)||(35536871-35536912)
chr1 (378-450)||(10645695-10645767)
chr1 (377-444)||(25685825-25685892)
chr1 (437-515)||(28843427-28843505)
chr1 (237-270)||(30602338-30602371)
chr1 (489-549)||(25685733-25685793)
[»] scaffold1432 (2 HSPs)
scaffold1432 (298-364)||(932-998)
scaffold1432 (435-562)||(936-1063)
[»] chr8 (9 HSPs)
chr8 (298-363)||(32884526-32884591)
chr8 (298-393)||(30525232-30525327)
chr8 (309-363)||(32879693-32879747)
chr8 (414-562)||(12704196-12704333)
chr8 (491-554)||(30525435-30525498)
chr8 (437-560)||(28883660-28883779)
chr8 (240-277)||(28883751-28883788)
chr8 (500-549)||(30525232-30525281)
chr8 (237-270)||(42160370-42160403)
[»] chr7 (14 HSPs)
chr7 (315-402)||(36496192-36496279)
chr7 (354-403)||(5473191-5473240)
chr7 (309-388)||(8745836-8745915)
chr7 (484-553)||(8745873-8745942)
chr7 (298-359)||(23972473-23972534)
chr7 (330-383)||(31495468-31495521)
chr7 (334-385)||(33804305-33804356)
chr7 (237-270)||(5473274-5473307)
chr7 (310-395)||(6720803-6720887)
chr7 (500-549)||(23972473-23972522)
chr7 (437-482)||(29155797-29155842)
chr7 (437-554)||(41243213-41243330)
chr7 (298-347)||(41243218-41243267)
chr7 (522-554)||(35035425-35035457)
[»] scaffold0557 (3 HSPs)
scaffold0557 (316-441)||(4044-4169)
scaffold0557 (371-444)||(4354-4427)
scaffold0557 (237-270)||(4634-4667)
[»] scaffold0549 (2 HSPs)
scaffold0549 (241-279)||(1062-1100)
scaffold0549 (241-279)||(3152-3190)
[»] chr6 (6 HSPs)
chr6 (500-554)||(10742262-10742316)
chr6 (241-279)||(11339963-11340001)
chr6 (450-544)||(27134291-27134385)
chr6 (237-270)||(6728575-6728608)
chr6 (315-392)||(12425715-12425792)
chr6 (231-271)||(33104578-33104618)
[»] scaffold0442 (1 HSPs)
scaffold0442 (361-441)||(7783-7863)
[»] scaffold0236 (1 HSPs)
scaffold0236 (298-346)||(22417-22465)


Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 55240148 - 55240728
Alignment:
Q  18 gtaagttggtctgctgccactgccaacctcacttgaaattcaaataggaattggcttttgtaaagtagtaagtcagtggttggttggtaagtaattgtga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55240148 gtaagttggtctgctgccactgccaacctcacttgaaattcaaataggaattggcttttgtaaagtagtaagtcagtggttggttggtaagtaattgtga 55240247  T
Q  118 gtatggtcatcatctgattgagtcggcctcatgtcatgnnnnnnnnaacgctaatctactggaattatgatctttcattttcatcagacatcttaaggta 217  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  55240248 gtatggtcatcatctgattgagtcggcctcatgtcatgttttttttaacgctaatctactggaattatgatctttcattttcagtagacatcttaaggta 55240347  T
Q  218 tctccacgagttaggtctattgaagttggttttaaagttgtttgtagtttgttgttagtctt----tgctcaggttat--------tgagtgtaaatata 305  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    |||||||||| |        ||||||||||||||    
T  55240348 tctccacgagttaggtctattga-gttggttttaaagttgtttgtagtttgttgttagttttatattgctcaggttttcaggttgttgagtgtaaatata 55240446  T
Q  306 cttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatc 405  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||       
T  55240447 cttgagtatcctcatcctttgagttagcttttgggatgagattcaagccaatttaacatggtattagagtcgggttaaagattgcaatgtaggaattgga 55240546  T
Q  406 cccaagctcacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaata 505  Q
    | |||||||  ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||| | ||||||||||| ||||||    
T  55240547 ctcaagctcttgctagacgtgagggtggatgttgaagttgtttgtagtttgttgttagtttcgtattgctcaagttttcaggatgttgagtatataaata 55240646  T
Q  506 tgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatcattgaaaccattatt 587  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55240647 tgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatggtatcattgaaaccattatt 55240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 54137332 - 54137192
Alignment:
Q  321 cctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgcta 420  Q
    ||||| |||||| |||||||||||||||||||   | |||||||||||| |||||||||||||||||||||||||  ||||||  |||| || ||| |||    
T  54137332 ccttttagttagcttttgggatgagattcaagctcaattaacatggtatcagagtcgggttaaggattgcaatgtgagaattagacccaggcccactcta 54137233  T
Q  421 gacgtgagggtg--ggtgttg-aagttatttgtagtttgtt 458  Q
    | ||||||||||  ||| ||| ||||| |||||||||||||    
T  54137232 ggcgtgagggtggtggtattgaaagttgtttgtagtttgtt 54137192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 306 - 445
Target Start/End: Complemental strand, 23564605 - 23564466
Alignment:
Q  306 cttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatc 405  Q
    |||||||| |||||||||||||| ||  |||||||||||||| |||  |||||||||||||||| |||| | |||||| ||||  ||||| ||||| |      
T  23564605 cttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatcagagcctggttaaagattataatgtgggaatcaga 23564506  T
Q  406 cccaagctcacgctagacgtgagggtgggtgttgaagtta 445  Q
    | || || |||||||| ||||||||||||||| |||||||    
T  23564505 ctcaggcccacgctaggcgtgagggtgggtgtggaagtta 23564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 298 - 404
Target Start/End: Original strand, 582248 - 582354
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 397  Q
    ||||||||||||| || | | |||||||||||||  ||||  ||||||||||||||  |||||||||||||| ||||||||||| | ||||||||||| |    
T  582248 taaatatacttgaatacctttatcctttgagttaacttttaagatgagattcaagttcatttaacatggtatcagagtcgggtttaagattgcaatgtgg 582347  T
Q  398 gaattat 404  Q
    |||||||    
T  582348 gaattat 582354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 291 - 444
Target Start/End: Complemental strand, 8837107 - 8836953
Alignment:
Q  291 ttgagtgtaaa-tatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 389  Q
    ||||||||||| |||  ||||||| |||||| ||||||| ||   |||||||||||||||||  |||||||||||||||| | ||| |||||||||||||    
T  8837107 ttgagtgtaaaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaacatggtatcacagttgggttaaggattg 8837008  T
Q  390 caatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    |||||  ||||||    |||    |||||||||||||||||||| ||||||||||    
T  8837007 caatgcgggaattgaaaccagaaccacgctagacgtgagggtggatgttgaagtt 8836953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 335 - 553
Target Start/End: Complemental strand, 36165693 - 36165464
Alignment:
Q  335 tttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtggg 434  Q
    ||||||||||||| |||||||||| |||||||||||||||  | | ||| ||||||||||| |||||||  | || ||||||||||| | | || |||||    
T  36165693 tttgggatgagat-caagtctattaaacatggtattagagctgagataaagattgcaatgtgggaattagactcaggctcacgctaggcataagagtggg 36165595  T
Q  435 tgttgaagtta------------tttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcat 522  Q
    |||||||||||            |||||| ||||||  ||||| |  |||||| |  ||  |||  |||||||| | |||| ||||||||||||||||||    
T  36165594 tgttgaagttagttttgaagttgtttgtaatttgtttctagtcccacattgctaaggttcccgggttgttgagtgtataaagatgtttgagtaccctcat 36165495  T
Q  523 cttttgagcgagcttttgggatgagatccaa 553  Q
    |||||| || || ||||||||||||||||||    
T  36165494 cttttgtgctagattttgggatgagatccaa 36165464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 11784977 - 11785065
Alignment:
Q  435 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatc 523  Q
    |||||||||| |||||||||||||||||||| |  ||| ||||  || ||||| |||||||| | ||||||||||||||||||||||||    
T  11784977 tgttgaagttgtttgtagtttgttgttagtcccacattactcaggttctcggactgttgagtgtataaatatgtttgagtaccctcatc 11785065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 573
Target Start/End: Complemental strand, 23564622 - 23564540
Alignment:
Q  491 ttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 573  Q
    |||||| || || |||| ||||||||||||||| ||||||| | |||||||||||||||||||| ||||||| |||| |||||    
T  23564622 ttgagtgtgcaagtatgcttgagtaccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatca 23564540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 480 - 573
Target Start/End: Complemental strand, 9929051 - 9928957
Alignment:
Q  480 ttttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgaga-tccaaatctatttagcatgttatca 573  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||||||||||| | ||||||| || ||| |||||  ||||||| |||| |||||    
T  9929051 ttttcggatcgttgagtatataaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacatggtatca 9928957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 444
Target Start/End: Complemental strand, 23564318 - 23564195
Alignment:
Q  317 tcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcac 416  Q
    ||||| ||| ||||||  ||||||||||||| |||||| |||||||| |||    ||||||||||| |||||||| | | ||||||   ||||| | |||    
T  23564318 tcatcttttaagttagcatttgggatgagatccaagtcaatttaacaaggt----gagtcgggttatggattgcagttttggaattggacccaatcccac 23564223  T
Q  417 gctagacgtgagggtgggtgttgaagtt 444  Q
    |||||| ||||||||| |||||||||||    
T  23564222 gctagatgtgagggtgagtgttgaagtt 23564195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 18523073 - 18523020
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 553  Q
    |||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||    
T  18523073 taaatatgcttgagtaccatcatcctttgagcgagcttttggtatgagatccaa 18523020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 554
Target Start/End: Complemental strand, 36166009 - 36165892
Alignment:
Q  437 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 536  Q
    |||||||| |||||||||| || ||||||||  |||  |||   |||||| ||||||||| | |||| ||||||||| ||||||||| ||| ||| | ||    
T  36166009 ttgaagttgtttgtagtttatttttagtctcacattattcaggctttcgggatgttgagtgtataaacatgtttgagcaccctcatcctttaagctaact 36165910  T
Q  537 tttgggatgagatccaaa 554  Q
    |||| |||||||||||||    
T  36165909 tttgcgatgagatccaaa 36165892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 18523268 - 18523164
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 397  Q
    |||||||  ||||||| |||||||||||||| ||  ||||||||  |||| |||| |||||| |||  |||| |||| ||||||||| |||||||||| |    
T  18523268 taaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaagcctatttcacagagtatcagagccgggttaagaattgcaatgttg 18523169  T
Q  398 gaatt 402  Q
    |||||    
T  18523168 gaatt 18523164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 444
Target Start/End: Complemental strand, 36165508 - 36165367
Alignment:
Q  307 ttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtagga----att 402  Q
    ||||||| ||||||| |||| | ||| |||||||||||||| |||| | ||||| |||||||  | |  | |||||||||||||||||| |||    |||    
T  36165508 ttgagtaccctcatcttttgtgctagattttgggatgagatccaagcccatttaccatggtaacaaaaccaggttaaggattgcaatgtgggacagaatt 36165409  T
Q  403 atccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
       | ||||| |||||||| ||||||||||||||||||||||    
T  36165408 ggactcaagcccacgctaggcgtgagggtgggtgttgaagtt 36165367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 444
Target Start/End: Original strand, 2346305 - 2346394
Alignment:
Q  355 tatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    ||||||||||||||| | || ||||||||||||||| |||| ||||||   ||||  | || |||||  |||||||||||||||||||||    
T  2346305 tatttaacatggtatcaaaggcgggttaaggattgcgatgtgggaattggacccagacccatgctaggtgtgagggtgggtgttgaagtt 2346394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 562
Target Start/End: Complemental strand, 23564400 - 23564275
Alignment:
Q  437 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 536  Q
    |||||||| ||||||||||||| || ||| |  ||||||||  ||||| |  |||||||| | ||| ||||||| || ||| ||||||||| ||  |||     
T  23564400 ttgaagttgtttgtagtttgttatttgtcccacattgctcaggttttcaggttgttgagtgtataagtatgttttagaaccttcatcttttaagttagca 23564301  T
Q  537 tttgggatgagatccaaatctattta 562  Q
    ||||||||||||||||| || |||||    
T  23564300 tttgggatgagatccaagtcaattta 23564275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 573
Target Start/End: Complemental strand, 8837098 - 8837026
Alignment:
Q  501 aaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 573  Q
    ||||||||||||||||||||||  ||||||| |   ||||||||||||| |||| ||||||| |||| |||||    
T  8837098 aaatatgtttgagtaccctcattctttgagctaaactttgggatgagattcaaacctatttaacatggtatca 8837026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 53090125 - 53090085
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtc 277  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  53090125 ttgaagttgattttgaagttgtttgtagtttgttgttagtc 53090085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 9706232 - 9706293
Alignment:
Q  333 tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 395  Q
    |||||| | |||||| |||||| ||||| |||||||| || ||||||||||||||||||||||    
T  9706232 tttttgagttgagatccaagtc-atttagcatggtatcagggtcgggttaaggattgcaatgt 9706293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 19680618 - 19680584
Alignment:
Q  240 aagttggttttaaagttgtttgtagtttgttgtta 274  Q
    ||||||||||||||||| |||||||||||||||||    
T  19680618 aagttggttttaaagttatttgtagtttgttgtta 19680584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 2346182 - 2346215
Alignment:
Q  240 aagttggttttaaagttgtttgtagtttgttgtt 273  Q
    |||||||||||||||||||||||||||| |||||    
T  2346182 aagttggttttaaagttgtttgtagtttattgtt 2346215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 9929031 - 9928934
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagatt-caagtctatttaacatggtattagagtcgggttaaggattgcaatg 394  Q
    |||||||  ||||||||||||||| |||||| ||  |||||| || ||||| |||| |||||||||||||||| | ||| || |||| ||||| ||||    
T  9929031 taaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacatggtatcaaagttggtttaaagattgtaatg 9928934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 18523268 - 18523215
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 553  Q
    |||||||||||||||||||||||| ||||||  | |||||||||  ||||||||    
T  18523268 taaatatgtttgagtaccctcatcctttgaggtatcttttgggagcagatccaa 18523215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 18523343 - 18523310
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  18523343 ttgaagttggttttgaagttgtttgtagtttgtt 18523310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 23564202 - 23564169
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    ||||||||||||||||||||| ||||||||||||    
T  23564202 ttgaagttggttttaaagttgattgtagtttgtt 23564169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 25050087 - 25050128
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 278  Q
    |||||||||||||| |||||||||||||  ||||||||||||    
T  25050087 ttgaagttggttttgaagttgtttgtagcatgttgttagtct 25050128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 36165374 - 36165337
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgtta 274  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36165374 ttgaagttgattttaaagttgtttttagtttgttgtta 36165337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 37927660 - 37927701
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 278  Q
    |||||||| ||||| ||||||||||||||||||| |||||||    
T  37927660 ttgaagttagttttgaagttgtttgtagtttgttattagtct 37927701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 55241497 - 55241538
Alignment:
Q  322 ctttgagttagtttttgggatgagattcaagtctatttaaca 363  Q
    ||||||| ||| |||||||||||||||||||| |||||||||    
T  55241497 ctttgagctagcttttgggatgagattcaagtttatttaaca 55241538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 36165807 - 36165767
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtc 277  Q
    |||||| | ||||| ||||||||||||||||||||||||||    
T  36165807 ttgaaggttgttttgaagttgtttgtagtttgttgttagtc 36165767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 41389552 - 41389516
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgtt 273  Q
    |||||||||||||| |||||||||||| |||||||||    
T  41389552 ttgaagttggttttgaagttgtttgtattttgttgtt 41389516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 465
Target Start/End: Original strand, 42042130 - 42042281
Alignment:
Q  314 tcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagct 413  Q
    ||||||| | ||||| |||||||||||||||||| |||   ||||||||||||||| |||||||||||||||||||| |||| ||||||   | |||||     
T  42042130 tcctcattcattgagctagtttttgggatgagatccaaacttatttaacatggtatcagagtcgggttaaggattgcgatgtgggaattgggcacaagcc 42042229  T
Q  414 cacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtc 465  Q
     ||||||  || |||||||||||| |||||| ||| ||||||||||||||||    
T  42042230 tacgctaagcgcgagggtgggtgtcgaagttgtttatagtttgttgttagtc 42042281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 8402187 - 8402114
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 573  Q
    ||||||||||||||||||||| || ||||||| | |||||||||||| |||||||| |||||| |||| |||||    
T  8402187 taaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaatttatttaacatggtatca 8402114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 406 - 477
Target Start/End: Original strand, 10668462 - 10668532
Alignment:
Q  406 cccaagctcacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtctcgtattgctca 477  Q
    ||||||| |||||||| | |||||||||||||||||||| ||||||||||||| ||||||||  ||||||||    
T  10668462 cccaagcccacgctaggcctgagggtgggtgttgaagttgtttgtagtttgtt-ttagtctcacattgctca 10668532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 8402058 - 8401961
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 395  Q
    ||||||| |||||||| |||| ||||||||| ||  |||||| ||||||| |||   ||||||||||||||| |||| |||||||| |||||| ||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacatggtatcagagccgggttaatgattgcgatgt 8401961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 8402262 - 8402225
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgtta 274  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8402262 ttgaagttggttttaaagttgtttgtagtttgttgtta 8402225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 12835876 - 12835809
Alignment:
Q  322 ctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 389  Q
    ||||||||||||||| |||||||||||||||  |||||||||| |||| | | || ||||||||||||    
T  12835876 ctttgagttagttttcgggatgagattcaagattatttaacatagtatcaaaatcaggttaaggattg 12835809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 573
Target Start/End: Complemental strand, 8402058 - 8401985
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 573  Q
    |||||||| |||||||||||| || ||||||| | ||||||| ||||||||||||  |||||| |||| |||||    
T  8402058 taaatatgcttgagtaccctcctcctttgagctaacttttggaatgagatccaaacttatttaacatggtatca 8401985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 28432020 - 28431955
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 363  Q
    ||||||| |||||||||||||||||||| |  ||| |||||| |||| ||||||| ||||||||||    
T  28432020 taaatatgcttgagtatcctcatcctttaaactagcttttggaatgaaattcaagcctatttaaca 28431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 390
Target Start/End: Complemental strand, 8402187 - 8402095
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgc 390  Q
    |||||||  ||||||| |||| ||||||||| ||  ||||||||||| || ||| | ||||||||||||||| | || |||||||| ||||||    
T  8402187 taaatatgtttgagtaccctcctcctttgagctaacttttgggatgaaatccaaatttatttaacatggtatcaaagccgggttaatgattgc 8402095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 6423995 - 6424066
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 369  Q
    |||||||  ||||||||| ||||| ||| || |||||||| |||||||||||||   |||||||||||||||    
T  6423995 taaatatgtttgagtatcatcatcttttaagctagtttttaggatgagattcaatcttatttaacatggtat 6424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 33408212 - 33408153
Alignment:
Q  334 ttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 393  Q
    ||||||||||||||||||    |||||||||||||| |||||||| |||| |||||||||    
T  33408212 ttttgggatgagattcaaactcatttaacatggtatcagagtcggtttaatgattgcaat 33408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 369
Target Start/End: Complemental strand, 12867712 - 12867663
Alignment:
Q  320 tcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 369  Q
    ||||||||||||||||| |||||| ||||||||  |||||||||| ||||    
T  12867712 tcctttgagttagttttcgggatgcgattcaagattatttaacatagtat 12867663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 31540356 - 31540323
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  31540356 ttgaagttggttttgaagttgtttgtagtttgtt 31540323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 6423984 - 6424044
Alignment:
Q  489 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 549  Q
    |||||||| | |||||||||||||||| | ||||||||| ||| || |||| |||||||||    
T  6423984 tgttgagtgtataaatatgtttgagtatcatcatcttttaagctagtttttaggatgagat 6424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 298 - 444
Target Start/End: Original strand, 20490928 - 20491075
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttag-tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgta 396  Q
    |||||||||||||||| |||| || |||||| ||| ||||||||||||||| ||||   |||||||||||||| |||| | |||||| |||| ||||||     
T  20490928 taaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaagctcatttaacatggtatcagagccaggttaatgattacaatgtg 20491027  T
Q  397 ggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    ||||||    ||| || ||| |||||||||||||||||| ||||||||    
T  20491028 ggaattggatccaggcccacactagacgtgagggtgggtattgaagtt 20491075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 489 - 573
Target Start/End: Original strand, 50196900 - 50196984
Alignment:
Q  489 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctatttagcatgttatca 573  Q
    |||||||| | ||||||||||| | |||||||||| ||||||| | |||||||||||||||||||| ||||||| |||| |||||    
T  50196900 tgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatca 50196984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 544
Target Start/End: Original strand, 50197017 - 50197207
Alignment:
Q  354 ctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagttatttgtagt 453  Q
    |||||||||||||||| | |||||| |||||||||||||||| | ||||   |  |  | ||| ||||  ||||| ||||||||||||||| ||| ||||    
T  50197017 ctatttaacatggtatcatagtcggattaaggattgcaatgtggaaattggacttagacccacactaggggtgagagtgggtgttgaagttgtttatagt 50197116  T
Q  454 ttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggat 544  Q
    ||||| || ||| |  ||||||||  ||  || | |||||||| | |||||||| | ||||||||||||| ||||| | ||||||||||||    
T  50197117 ttgttatttgtcccacattgctcaggttcacgaactgttgagtgtataaatatggtcgagtaccctcatcctttgatctagcttttgggat 50197207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 20982799 - 20982851
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtctttgctcaggtt 289  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||||||    
T  20982799 ttgaagttagttttaaagttgtttgtagtttgttatttgtctttgctcaggtt 20982851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 22312323 - 22312377
Alignment:
Q  341 atgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 395  Q
    |||||||||||  |||||||||||||||| ||||||||||||| |||||||||||    
T  22312323 atgagattcaaacctatttaacatggtatcagagtcgggttaaagattgcaatgt 22312377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 30130846 - 30130780
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 364  Q
    ||||||| |||||||||| ||||| |||||| |||||||||||||||||| |||  |||||||||||    
T  30130846 taaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaacat 30130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 30135566 - 30135504
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30135566 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 30141695 - 30141633
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30141695 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30141633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 30145117 - 30145055
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||||||| ||||||||||||||| ||||||| | |||||||||||||||||||  |||||||    
T  30145117 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctattta 30145055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 562
Target Start/End: Complemental strand, 30130857 - 30130784
Alignment:
Q  489 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||||||| | |||||||| ||||||| | ||||| ||||||| || ||||||||||||||||||| |||||||    
T  30130857 tgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctattta 30130784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 30135566 - 30135500
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 364  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30135566 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30135500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 30141695 - 30141629
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 364  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30141695 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30141629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 30145117 - 30145051
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 364  Q
    ||||||| |||||||| ||||||| |||||| ||  |||||||||||||| |||| |||||||||||    
T  30145117 taaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30145051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 331620 - 331579
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 278  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  331620 ttgaagtcggttttaaagttgtttgtagtttgtttttagtct 331579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 553
Target Start/End: Original strand, 20490917 - 20490982
Alignment:
Q  489 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagc-ttttgggatgagatccaa 553  Q
    |||||||| | |||||||  |||||||||||| |||||||||| ||| ||||||||||||||||||    
T  20490917 tgttgagtgtataaatatacttgagtaccctcgtcttttgagctagctttttgggatgagatccaa 20490982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 20982704 - 20982671
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    ||||||||||||||||||||||||||||||||||    
T  20982704 ttgaagttggttttaaagttgtttgtagtttgtt 20982671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 20995587 - 20995554
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    ||||||||||||||||||||||||||||||||||    
T  20995587 ttgaagttggttttaaagttgtttgtagtttgtt 20995554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 22312204 - 22312245
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgttgttagtct 278  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttattagtct 22312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 40836677 - 40836722
Alignment:
Q  233 tctattgaagttggttttaaagttgtttgtagtttgttgttagtct 278  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||    
T  40836677 tctattgaagttggttttgaaattgtttgtagtttcttgttagtct 40836722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 20995595 - 20995690
Alignment:
Q  349 caagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtta 445  Q
    |||| |||||||||||| ||| |||| ||| |||| ||||||||||| | |||||  |||  || |||| ||| |||||||||||||||||||||||    
T  20995595 caagcctatttaacatgatatgagagccgg-ttaaagattgcaatgtggaaattagacccgggcccacgttaggcgtgagggtgggtgttgaagtta 20995690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 435 - 554
Target Start/End: Original strand, 11047444 - 11047563
Alignment:
Q  435 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgag 534  Q
    |||||||||| |||||||||||||  ||||| |  ||||||||  |||  |   |||||||| | |||||| | ||||||||||||||| ||||||| |     
T  11047444 tgttgaagttgtttgtagtttgtttctagtcccacattgctcaggtttgtgcgctgttgagtgtataaatacgcttgagtaccctcatcctttgagctaa 11047543  T
Q  535 cttttgggatgagatccaaa 554  Q
    |||||  |||||||||||||    
T  11047544 cttttatgatgagatccaaa 11047563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 20982741 - 20982807
Alignment:
Q  379 gttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtta 445  Q
    ||||||||||||| || ||||||||  |||| || ||||||||  |||||||||| |||||||||||    
T  20982741 gttaaggattgcattgcaggaattagacccaggcgcacgctaggagtgagggtggatgttgaagtta 20982807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 50196928 - 50196982
Alignment:
Q  315 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtat 369  Q
    |||||||||||||| ||  |||||||||||||| |||  ||||||||||||||||    
T  50196928 cctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtat 50196982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 20982224 - 20982191
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    ||||||||||||||||| ||||||||||||||||    
T  20982224 ttgaagttggttttaaaattgtttgtagtttgtt 20982191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 323 - 458
Target Start/End: Original strand, 36201946 - 36202081
Alignment:
Q  323 tttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctaga 422  Q
    |||||||||| |||||||| ||||||||||  | ||||||||||||| |||||||||||||| ||| |||||| | ||||   | |||||||||| || |    
T  36201946 tttgagttagcttttgggaggagattcaagcatgtttaacatggtatcagagtcgggttaagaattacaatgtggaaattggactcaagctcacgttaaa 36202045  T
Q  423 cgtgagggtgggtgttgaagttatttgtagtttgtt 458  Q
    |||||| |||  ||||||| || |||||||||||||    
T  36202046 cgtgagagtgaatgttgaaattgtttgtagtttgtt 36202081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 299 - 444
Target Start/End: Complemental strand, 43829875 - 43829730
Alignment:
Q  299 aaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtagg 398  Q
    |||||| |||||||| |||||||| ||||| ||| | ||||||||||||  |||   ||| |||||||||| ||||||||||||||||||||| ||| ||    
T  43829875 aaatatgcttgagtaccctcatccattgagctagctgttgggatgagatcaaagctcattaaacatggtatcagagtcgggttaaggattgcagtgtggg 43829776  T
Q  399 aattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    | ||     || || |||  ||||||||||||||||||||||||||    
T  43829775 agttggattcaggcccacattagacgtgagggtgggtgttgaagtt 43829730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 527
Target Start/End: Complemental strand, 36053649 - 36053556
Alignment:
Q  434 gtgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatctttt 527  Q
    ||||||||||| ||||||||||| | |||||  |||||||||||  || | ||| |||| ||| ||||||||||||||| |||  |||||||||    
T  36053649 gtgttgaagttgtttgtagtttgcttttagttccgtattgctcaggttcttggactgtttagtgtgtaaatatgtttgaatactttcatctttt 36053556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 27492218 - 27492262
Alignment:
Q  356 atttaacatggtattagagtcgggttaaggattgcaatgtaggaa 400  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||    
T  27492218 atttaacatggtactagagccgggttaatgattgcaatgtaggaa 27492262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 18203157 - 18203095
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    ||||||||||| | |||||||||| ||||| | | ||||| ||||||||| ||||||||||||    
T  18203157 taaatatgtttaaataccctcatcatttgaactaacttttaggatgagattcaaatctattta 18203095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 30841608 - 30841546
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||||||||||||||| ||||||| ||| | | | ||| |||||||||||||||| |||||||    
T  30841608 taaatatgtttgagtatcctcatcctttaaactaacttgtgggatgagatccaaacctattta 30841546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 541
Target Start/End: Complemental strand, 43829677 - 43829620
Alignment:
Q  484 cggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgg 541  Q
    |||| |||||||| | |||||||||||||||| ||||||  ||||||| |||||||||    
T  43829677 cggactgttgagtgtataaatatgtttgagtatcctcattctttgagctagcttttgg 43829620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 550
Target Start/End: Complemental strand, 43829875 - 43829826
Alignment:
Q  501 aaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatc 550  Q
    ||||||| |||||||||||||||  |||||| |||| |||||||||||||    
T  43829875 aaatatgcttgagtaccctcatccattgagctagctgttgggatgagatc 43829826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 315 - 402
Target Start/End: Original strand, 10199964 - 10200051
Alignment:
Q  315 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 402  Q
    ||||||||||||| |||  ||||||||||||||||||| | ||||||||||||||| | ||||||||||| |||||||||| ||||||    
T  10199964 cctcatcctttgaattaacttttgggatgagattcaagcccatttaacatggtattggtgtcgggttaagaattgcaatgtgggaatt 10200051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 298 - 444
Target Start/End: Original strand, 49293023 - 49293169
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtag 397  Q
    |||||||  |||| || |||| ||| ||||| ||| ||||| ||||||||||| |  ||||| || | |||||||||||||||||||||| ||||||| |    
T  49293023 taaatatttttgaataccctcgtcccttgagctagcttttgagatgagattcaggcatattttacgtcgtattagagtcgggttaaggatcgcaatgtgg 49293122  T
Q  398 gaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    |||||   | ||| | || | |||||||||||||| |||||||||||    
T  49293123 gaattggactcaaacccatgatagacgtgagggtgagtgttgaagtt 49293169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 333 - 465
Target Start/End: Original strand, 30602442 - 30602574
Alignment:
Q  333 tttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtg 432  Q
    |||||| ||| |||| |||  |||||||||||| |||||||||| |||||||||||||||| | | ||||    ||| || ||||||||  |||||||||    
T  30602442 tttttgagataagatccaaacctatttaacatgatattagagtcaggttaaggattgcaatttggaaattggatccaggcccacgctaggagtgagggtg 30602541  T
Q  433 ggtgttgaagttatttgtagtttgttgttagtc 465  Q
     || |||||||| |||||||| | |||||||||    
T  30602542 agttttgaagttgtttgtagtcttttgttagtc 30602574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 3371665 - 3371709
Alignment:
Q  509 ttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 553  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  3371665 ttgagtaccctcatcttttgaggtagcttttgggatgagatccaa 3371709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 500 - 548
Target Start/End: Complemental strand, 12178147 - 12178099
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgaga 548  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  12178147 taaatatgtttgagtaccctcatcctttgacctagcttttgggatgaga 12178099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 31061253 - 31061317
Alignment:
Q  301 atatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatg 365  Q
    ||||| ||||||||| ||||| |||||||||| |||| | |||||||||||| ||||||||||||    
T  31061253 atatatttgagtatcatcatcttttgagttagcttttagaatgagattcaagcctatttaacatg 31061317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 35536823 - 35536769
Alignment:
Q  310 agtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 364  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||| |||||||||    
T  35536823 agtatcctcatcatttgagttaacttttgggatgagattgaagtccatttaacat 35536769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 40883985 - 40884051
Alignment:
Q  323 tttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattg 389  Q
    |||||||||||||||| ||||  || ||||   ||||||||||||||||||||||||||||| ||||    
T  40883985 tttgagttagtttttgtgatgtaatccaagctgatttaacatggtattagagtcgggttaagaattg 40884051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 562
Target Start/End: Original strand, 10645792 - 10645865
Alignment:
Q  489 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||||||| | |||||||||||||||||||||||| || |||| | |||||  ||||||||| ||| |||||||    
T  10645792 tgttgagtgtataaatatgtttgagtaccctcatccttagagctatcttttaagatgagatcaaaacctattta 10645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 35536912 - 35536871
Alignment:
Q  235 tattgaagttggttttaaagttgtttgtagtttgttgttagt 276  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  35536912 tattgaagttcgttttaaagttgttggtagtttgttgttagt 35536871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 10645695 - 10645767
Alignment:
Q  378 ggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagttatttgt 450  Q
    |||||| |||| |||||| |||||| | | || || |||||||| |||||||||||||||||||||| |||||    
T  10645695 ggttaaagattccaatgtgggaattgtactcaggcccacgctaggcgtgagggtgggtgttgaagttgtttgt 10645767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 25685825 - 25685892
Alignment:
Q  377 gggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    ||||||||||||||||||||| |||||  ||||||  ||| |||||| ||||| ||| ||||||||||    
T  25685825 gggttaaggattgcaatgtagaaattagacccaagtccacactagacatgaggatggatgttgaagtt 25685892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 28843505 - 28843427
Alignment:
Q  437 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagta 515  Q
    |||||||| ||||||||||||| ||||| ||  || |||||| ||||||||  ||||||| | |||||||| |||||||    
T  28843505 ttgaagttgtttgtagtttgtttttagtttcacatcgctcaagttttcggaccgttgagtgtataaatatgcttgagta 28843427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 30602338 - 30602371
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  30602338 ttgaagttggttttgaagttgtttgtagtttgtt 30602371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 25685733 - 25685793
Alignment:
Q  489 tgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 549  Q
    |||||||| | ||||||||||||| ||| |||||| ||||||| ||||||| |||| ||||    
T  25685733 tgttgagtgtataaatatgtttgaatactctcatcatttgagctagcttttaggataagat 25685793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 998 - 932
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacat 364  Q
    |||||||  ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||    
T  998 taaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 435 - 562
Target Start/End: Complemental strand, 1063 - 936
Alignment:
Q  435 tgttgaagttatttgtagtttgttgttagtctcgtattgctcaa-attttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcga 533  Q
    |||||||||| |||||||||||||||||||||| ||| |||||  ||  | ||  |||||| | | |||||||||||||||| ||||||| |||||| ||    
T  1063 tgttgaagttgtttgtagtttgttgttagtctcatatcgctcaggatcataggt-tgttgaatgtataaatatgtttgagtatcctcatcctttgagtga 965  T
Q  534 gcttttgggatgagatccaaatctattta 562  Q
    ||||||||||||||||  || ||||||||    
T  964 gcttttgggatgagatttaagtctattta 936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 32884591 - 32884526
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 363  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||    
T  32884591 taaatatgtttgagtatcctcatcctttaagttagtttttgggatgaaattcaagactatttaaca 32884526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 393
Target Start/End: Original strand, 30525232 - 30525327
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaat 393  Q
    |||||||  |||||||  ||||| ||||||| ||| |||||||||||||| ||||   |||||||||||||| ||||||| |||||||||||||||    
T  30525232 taaatatgtttgagtactctcattctttgagctagcttttgggatgagatacaagcacatttaacatggtatcagagtcgagttaaggattgcaat 30525327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 32879747 - 32879693
Alignment:
Q  309 gagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaaca 363  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  32879747 gagtaccctcatcctttaagttagtttttgggatgagattcaagactatttaaca 32879693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 414 - 562
Target Start/End: Original strand, 12704196 - 12704333
Alignment:
Q  414 cacgctagacgtgagggtgggtgttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgag 513  Q
    |||||||| ||||||||||  |||||||||| |||||||||||||||||||| |  || ||||||||||    ||||       | ||||||||||||||    
T  12704196 cacgctaggcgtgagggtgaatgttgaagttgtttgtagtttgttgttagtcccacatcgctcaaattt---aaatg-------tataaatatgtttgag 12704285  T
Q  514 taccctcatcttttgagcgagcttttgggatgagatccaaatctattta 562  Q
    |||| |||||||||| || ||||||| |||| ||||||||| |||||||    
T  12704286 taccttcatcttttgtgctagctttt-ggataagatccaaacctattta 12704333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 554
Target Start/End: Original strand, 30525435 - 30525498
Alignment:
Q  491 ttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 554  Q
    |||||| | |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||    
T  30525435 ttgagtgtataaatatgtttgagtaccttcatcttttgagctacctttttggatgagatccaaa 30525498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 560
Target Start/End: Complemental strand, 28883779 - 28883660
Alignment:
Q  437 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 536  Q
    |||||||| |||||||||||||||||||| |     |||||  |||||||  |||| ||| | |||||||||||||||||||||||  |  |||  ||||    
T  28883779 ttgaagttgtttgtagtttgttgttagtccca----gctcaggttttcgggttgttaagtgtataaatatgtttgagtaccctcattctccgaggtagct 28883684  T
Q  537 tttgggatgagatccaaatctatt 560  Q
    |||| ||||||||||||| |||||    
T  28883683 tttgagatgagatccaaacctatt 28883660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 28883788 - 28883751
Alignment:
Q  240 aagttggttttaaagttgtttgtagtttgttgttagtc 277  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  28883788 aagttggttttgaagttgtttgtagtttgttgttagtc 28883751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 30525232 - 30525281
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 549  Q
    ||||||||||||||||| |||||  ||||||| |||||||||||||||||    
T  30525232 taaatatgtttgagtactctcattctttgagctagcttttgggatgagat 30525281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 42160370 - 42160403
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||||||||||||| |||||||||    
T  42160370 ttgaagttggttttaaagttgtttatagtttgtt 42160403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 402
Target Start/End: Complemental strand, 36496279 - 36496192
Alignment:
Q  315 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatt 402  Q
    |||||||| ||||| ||| ||||||||||||||||||| | |||| ||||||||| ||| |  | |||||||||||||||| ||||||    
T  36496279 cctcatccattgagctagcttttgggatgagattcaagcccatttcacatggtatcagacttcgattaaggattgcaatgtgggaatt 36496192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 5473191 - 5473240
Alignment:
Q  354 ctatttaacatggtattagagtcgggttaaggattgcaatgtaggaatta 403  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||    
T  5473191 ctatttaacatggtatcagagtcggattaaggattgtaatgtaggaatta 5473240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 8745915 - 8745836
Alignment:
Q  309 gagtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggatt 388  Q
    ||||||||||||||||| || ||  |||||||||||||| ||||   |||||||||| ||| ||||| ||||||||||||    
T  8745915 gagtatcctcatcctttaagctaacttttgggatgagatccaagctcatttaacatgatatcagagttgggttaaggatt 8745836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 8745942 - 8745873
Alignment:
Q  484 cggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaa 553  Q
    |||| |||||||| | |||||||||| ||||| ||||||| ||| ||| | |||||||||||||||||||    
T  8745942 cggactgttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagatccaa 8745873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 23972473 - 23972534
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagattcaagtctattt 359  Q
    |||||||  ||||||| |||||||||||||||||  |||||| |||||||||||| ||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagattcaagcctattt 23972534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 31495521 - 31495468
Alignment:
Q  330 tagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaa 383  Q
    ||||||||||||||||||||||   ||||| ||||||||||||||| |||||||    
T  31495521 tagtttttgggatgagattcaaacatattttacatggtattagagttgggttaa 31495468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 33804356 - 33804305
Alignment:
Q  334 ttttgggatgagattcaagtctatttaacatggtattagagtcgggttaagg 385  Q
    ||||||||||||||||| | |||||||||||||||| ||||| | |||||||    
T  33804356 ttttgggatgagattcatgcctatttaacatggtatcagagttgagttaagg 33804305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 5473274 - 5473307
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  5473274 ttgaagttggttttgaagttgtttgtagtttgtt 5473307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 6720887 - 6720803
Alignment:
Q  310 agtatcctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaatgt 395  Q
    |||| |||||||||||  | ||| |||||||||||||| |||| |||||||||||  | | |||| ||||||||| ||||||||||    
T  6720887 agtaccctcatcctttaggctagcttttgggatgagatacaaggctatttaacat-atctcagagccgggttaagaattgcaatgt 6720803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 23972473 - 23972522
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagat 549  Q
    |||||||||||||||||||||||| ||||||  | ||||||| |||||||    
T  23972473 taaatatgtttgagtaccctcatcctttgagttaacttttggaatgagat 23972522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 482
Target Start/End: Complemental strand, 29155842 - 29155797
Alignment:
Q  437 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattt 482  Q
    |||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  29155842 ttgatgttatttatagtttgttgttagtctcatatagctcaaattt 29155797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 554
Target Start/End: Complemental strand, 41243330 - 41243213
Alignment:
Q  437 ttgaagttatttgtagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagct 536  Q
    |||| ||| ||||||||||||| || ||| | ||||||| |  ||||| |  ||| |||| | |||||||  ||||||| |||||||  |||||| | ||    
T  41243330 ttgacgttgtttgtagtttgttatttgtcccatattgcttaggttttcaggttgtggagtctataaatatacttgagtaacctcatccgttgagctaact 41243231  T
Q  537 tttgggatgagatccaaa 554  Q
    ||||||||||||||||||    
T  41243230 tttgggatgagatccaaa 41243213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 41243267 - 41243218
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgagat 347  Q
    |||||||||||||||| |||||||| ||||| ||  ||||||||||||||    
T  41243267 taaatatacttgagtaacctcatccgttgagctaacttttgggatgagat 41243218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 554
Target Start/End: Complemental strand, 35035457 - 35035425
Alignment:
Q  522 tcttttgagcgagcttttgggatgagatccaaa 554  Q
    |||||||||| ||||||||||||||||||||||    
T  35035457 tcttttgagctagcttttgggatgagatccaaa 35035425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 441
Target Start/End: Complemental strand, 4169 - 4044
Alignment:
Q  316 ctcatcctttgagttagtttttgggatgagattcaagtct-atttaacatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctc 414  Q
    |||||| |||||| ||  ||||||||||||||  || ||| |||| ||||||||||||||| ||||||| || || |||||  |||||   | |||||||    
T  4169 ctcatcttttgagctatcttttgggatgagatctaa-tctcattttacatggtattagagttgggttaaagactgaaatgtgagaattggacacaagctc 4071  T
Q  415 acgctagacgtgagggtgggtgttgaa 441  Q
    | ||||| |||||||||||||||||||    
T  4070 atgctaggcgtgagggtgggtgttgaa 4044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 444
Target Start/End: Original strand, 4354 - 4427
Alignment:
Q  371 agagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaagtt 444  Q
    ||||||||||||| ||||||||||| ||||||   ||||| |||||||||| | |||||||| |||| ||||||    
T  4354 agagtcgggttaaagattgcaatgttggaattgaacccaatctcacgctaggcatgagggtgtgtgtcgaagtt 4427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 4634 - 4667
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  4634 ttgaagttggttttgaagttgtttgtagtttgtt 4667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 1062 - 1100
Alignment:
Q  241 agttggttttaaagttgtttgtagtttgttgttagtctt 279  Q
    |||||||||||||||||||||||||||||| || |||||    
T  1062 agttggttttaaagttgtttgtagtttgttatttgtctt 1100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 3152 - 3190
Alignment:
Q  241 agttggttttaaagttgtttgtagtttgttgttagtctt 279  Q
    |||||||||||||||||||||||||||||| || |||||    
T  3152 agttggttttaaagttgtttgtagtttgttatttgtctt 3190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 554
Target Start/End: Original strand, 10742262 - 10742316
Alignment:
Q  500 taaatatgtttgagtaccctcatcttttgagcgagcttttgggatgagatccaaa 554  Q
    |||||||||||| ||||||| ||| |||||   ||||||||||||||||||||||    
T  10742262 taaatatgtttgggtaccctaatcatttgatttagcttttgggatgagatccaaa 10742316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 11339963 - 11340001
Alignment:
Q  241 agttggttttaaagttgtttgtagtttgttgttagtctt 279  Q
    |||||||||||||||||||||||||||||| || |||||    
T  11339963 agttggttttaaagttgtttgtagtttgttatttgtctt 11340001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 450 - 544
Target Start/End: Original strand, 27134291 - 27134385
Alignment:
Q  450 tagtttgttgttagtctcgtattgctcaaattttcggaatgttgagtatgtaaatatgtttgagtaccctcatcttttgagcgagcttttgggat 544  Q
    ||||||||||||||||||  |||||| | ||| |||   |||||||| | ||||||||||||||||| | ||||| ||||   ||||||||||||    
T  27134291 tagtttgttgttagtctcacattgcttagattctcgagttgttgagtgtataaatatgtttgagtactcacatctattgaatcagcttttgggat 27134385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 6728575 - 6728608
Alignment:
Q  237 ttgaagttggttttaaagttgtttgtagtttgtt 270  Q
    |||||||||||||||||||||||| |||||||||    
T  6728575 ttgaagttggttttaaagttgtttatagtttgtt 6728608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 392
Target Start/End: Original strand, 12425715 - 12425792
Alignment:
Q  315 cctcatcctttgagttagtttttgggatgagattcaagtctatttaacatggtattagagtcgggttaaggattgcaa 392  Q
    ||||||| ||| || || |||||| ||||||||||||  | |||||||||||||| ||||||| ||| || |||||||    
T  12425715 cctcatcatttaagctaatttttgtgatgagattcaatcccatttaacatggtatcagagtcgagttgagtattgcaa 12425792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 33104578 - 33104618
Alignment:
Q  231 ggtctattgaagttggttttaaagttgtttgtagtttgttg 271  Q
    ||||| ||||||||| |||| ||||||||||||||||||||    
T  33104578 ggtctgttgaagttgattttgaagttgtttgtagtttgttg 33104618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 441
Target Start/End: Complemental strand, 7863 - 7783
Alignment:
Q  361 acatggtattagagtcgggttaaggattgcaatgtaggaattatccccaagctcacgctagacgtgagggtgggtgttgaa 441  Q
    ||||||||||| ||| ||||||| || ||||||||  |||||   | |||||||| ||||| || ||||||||||||||||    
T  7863 acatggtattatagttgggttaaagactgcaatgtgagaattggacacaagctcatgctaggcgggagggtgggtgttgaa 7783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 22417 - 22465
Alignment:
Q  298 taaatatacttgagtatcctcatcctttgagttagtttttgggatgaga 346  Q
    ||||||| |||||||| | ||||||||||| |||| |||||||||||||    
T  22417 taaatatgcttgagtaccttcatcctttgaattagcttttgggatgaga 22465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University