View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9828_low_4 (Length: 574)

Name: NF9828_low_4
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9828_low_4
NF9828_low_4
[»] chr4 (11 HSPs)
chr4 (224-560)||(3762778-3763114)
chr4 (50-169)||(3763683-3763802)
chr4 (333-527)||(3776886-3777077)
chr4 (344-560)||(3751793-3752015)
chr4 (344-536)||(3755684-3755882)
chr4 (331-536)||(3767206-3767414)
chr4 (333-509)||(3781217-3781393)
chr4 (344-551)||(3745985-3746198)
chr4 (403-534)||(3771444-3771572)
chr4 (58-191)||(3775566-3775699)
chr4 (189-229)||(3763523-3763563)
[»] chr7 (1 HSPs)
chr7 (484-564)||(25985274-25985354)


Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 224 - 560
Target Start/End: Complemental strand, 3763114 - 3762778
Alignment:
Q  224 taataattgaccctaccccactccattttatattcctattcctatatatgcttcacttcattaagcagataacaaagttagcatcacaatttcacaattt 323  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||  |    
T  3763114 taataattgaccctatcccactccattttattttcctattcctatatatgcttcacttgactaagcagataacaaagttagcatcacattttcacaaact 3763015  T
Q  324 ccaccaaataatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaa 423  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3763014 ccaccaaattatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaa 3762915  T
Q  424 acttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtg 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3762914 acttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatgacatactaagtg 3762815  T
Q  524 gaaataaccctacaacaattacaattgttcaaccacc 560  Q
    |||||||||||||||||||||||||||||||||||||    
T  3762814 gaaataaccctacaacaattacaattgttcaaccacc 3762778  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 3763802 - 3763683
Alignment:
Q  50 ctctctacttctttataatgatgcatgtgagtcactaaaatgacgcaaccatgatcatgagccaacaaccacgccacacacccattctgattcagccatt 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3763802 ctctctacttctttataatgatgcatgtgagtcactaaaatgacgcaaccatgatcatgagccaacaaccacgccatacacccattctgattcagccatt 3763703  T
Q  150 gaatggaaccaaatgatata 169  Q
    ||||||||||||||||||||    
T  3763702 gaatggaaccaaatgatata 3763683  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 333 - 527
Target Start/End: Complemental strand, 3777077 - 3776886
Alignment:
Q  333 aatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||| ||||| ||||| ||   |||| ||| |||||| ||||| || ||||||    
T  3777077 aatgtcttccaaacatttcctcactttgttcttcttccttcttatctcttgtaacacactcacttc---ttcaacattagaaaaagaagatacctttgat 3776981  T
Q  433 tttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaa 527  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||| || ||||| |||||| | ||||||||    
T  3776980 tttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtggaaa 3776886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 344 - 560
Target Start/End: Complemental strand, 3752015 - 3751793
Alignment:
Q  344 aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcat------catcagaaaatgaagaaacttttgattttgt 437  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||      ||| ||||||  |||||||||||||||||||    
T  3752015 aacattttctcactttgttcttcttccttctcctctcttgcaacactctcacttcaacatcattacaatcattagaaaaacaagaaacttttgattttgt 3751916  T
Q  438 tcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctaca 537  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||| || ||  | ||||| || || || ||     
T  3751915 tcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatcccact 3751816  T
Q  538 acaattacaattgttcaaccacc 560  Q
     ||||||||||||||| ||||||    
T  3751815 gcaattacaattgttccaccacc 3751793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 344 - 536
Target Start/End: Complemental strand, 3755882 - 3755684
Alignment:
Q  344 aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcac---------atcaacttcatcatcagaaaatgaagaaacttttgattt 434  Q
    |||| ||| |||||||||||||||||||||| ||||||||||||||| ||||         |||| | ||||||||||||||||  || |||||||| ||    
T  3755882 aacacttcatcactttgttcttcttccttcttctttcttgcaacaccgtcactttaacaacatcatcatcatcatcagaaaatggtgacacttttgaatt 3755783  T
Q  435 tgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccct 534  Q
    ||||||||| ||||||||||| || ||| |||||||   ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| ||||||    
T  3755782 tgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccct 3755686  T

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Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 331 - 536
Target Start/End: Complemental strand, 3767414 - 3767206
Alignment:
Q  331 ataatgtcttccaaacatttcctca---ctttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaactt 427  Q
    |||||| ||||||||||||||||||   |||||||||||||||||||  | ||||||||||| ||| |  |  |  | |||||||||||  |||| ||      
T  3767414 ataatgccttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacag 3767315  T
Q  428 ttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaa 527  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||| || ||||| |||||| | ||||||||    
T  3767314 ttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaa 3767215  T
Q  528 taaccctac 536  Q
     ||||||||    
T  3767214 aaaccctac 3767206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 333 - 509
Target Start/End: Complemental strand, 3781393 - 3781217
Alignment:
Q  333 aatgtcttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgat 432  Q
    |||| ||||| |||||||||||||||||||||||||||||||  | ||||||||||| |||||  |  |  | |||||||||||  |||| ||||| |||    
T  3781393 aatgccttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagacactttcgat 3781294  T
Q  433 tttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggca 509  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||    
T  3781293 tttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggca 3781217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 344 - 551
Target Start/End: Complemental strand, 3746198 - 3745985
Alignment:
Q  344 aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatca------gaaaatgaagaaacttttgattttgt 437  Q
    |||| ||||||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||| ||      ||||| |||||||||| |||||||||    
T  3746198 aacacttcctcacttttttcttcttccttctcttctcttgcaacaccctcacttcaacttcatcaccatcatttgaaaaagaagaaacttatgattttgt 3746099  T
Q  438 tcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctaca 537  Q
    |||| ||||||||| ||| ||||||  |||||||||  | ||||| ||||| ||||| |||||||  ||||| |||||  | |||||||| ||||||||     
T  3746098 tcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctact 3745999  T
Q  538 acaattacaattgt 551  Q
     |||||||| ||||    
T  3745998 tcaattacagttgt 3745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 403 - 534
Target Start/End: Complemental strand, 3771572 - 3771444
Alignment:
Q  403 tcatcatcagaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattct 502  Q
    ||||||||||||||||| || |||||||| ||||||||||| ||||||||||| || ||| |||||   ||||||||||||||||| ||||| |||||||    
T  3771572 tcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagccta---aagaaggaaaaactaagtcatttcagattct 3771476  T
Q  503 actggcacgacatactaagtggaaataaccct 534  Q
    |||||||||| |||   |||||||| ||||||    
T  3771475 actggcacgagatagcgagtggaaaaaaccct 3771444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 3775699 - 3775566
Alignment:
Q  58 ttctttataatgatgcatgtgagtcactaaaatgacgcaaccatgatcatgagccaacaaccacgccacacacccattctgattcagccat-tga----a 152  Q
    ||||||||| ||||||||| |||||| | |||||||||||      ||||||||||||||| |||||||||||| |||| ||||||||||| |||    |    
T  3775699 ttctttata-tgatgcatgcgagtcaatgaaatgacgcaa------tcatgagccaacaactacgccacacacctattcagattcagccatgtgatgcca 3775607  T
Q  153 tggaaccaaatgata--tattcctatatatgctttttctca 191  Q
    |||||||||||||||  | ||||||| |||| |||||||||    
T  3775606 tggaaccaaatgatatgttttcctatctatgttttttctca 3775566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 3763563 - 3763523
Alignment:
Q  189 tcaatgaccagttctctttttatatttttgatccataataa 229  Q
    ||||||| || ||||||||||||||||||||||||||||||    
T  3763563 tcaatgatcacttctctttttatatttttgatccataataa 3763523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 564
Target Start/End: Original strand, 25985274 - 25985354
Alignment:
Q  484 ctaagccattttagattctactggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccacctttg 564  Q
    ||||||||||| | |||||| ||||| |||||| | |||||||| |||||| |  ||||  ||||||||| ||||||||||    
T  25985274 ctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttg 25985354  T

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