View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9828_low_5 (Length: 545)
Name: NF9828_low_5
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9828_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 6362604 - 6362079
Alignment:
| Q |
1 |
gagcagtgaggacattgcattagatgaaaacactttagaggaagagctacagaatgcaattgctgaggagaattatgctaaagctgcagaaataagggat |
100 |
Q |
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| T |
6362604 |
gagcagtgaggacattgcattagatgaaaacactttagaggaagagctacagaatgcaattgctgaggagaattatgctaaagctgcagaaataagggat |
6362505 |
T |
|
| Q |
101 |
acactaaaaaacctacaaaaagatagcaacacagcagtatttggagcaaacagcaagttttatgattcattcaggaatggcgaccttgcagccatgcaag |
200 |
Q |
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| T |
6362504 |
acactaaaaaacctacaaaaagatagcaacacagcagtatttggagcaaacagcaagttttatgattcattcaggaatggcgaccttgcagccatgcaag |
6362405 |
T |
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| Q |
201 |
gtatgtgggcaaaaacggacgaggtatgctgtgttcatcctggtatgaaaggaatatccggttatgatgatgttattgagagctgggatttcgtatgggc |
300 |
Q |
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| T |
6362404 |
gtatgtgggcaaaaatggacgaggtatgctgtgttcatcctggtatgaaaggaatatccggttatgatgatgttattgagagctgggatttcgtatgggc |
6362305 |
T |
|
| Q |
301 |
taactatgaatttccattacaaattaaactagaagacattaaagttcatgctagaggggacatggggtatgttacttgcatggaatttgtaaaagcgaaa |
400 |
Q |
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| T |
6362304 |
taactatgaatttccattacaaattaaactagaagacattaaagttcatgctagaggggacatggggtatgttacttgcatggaatttgtaaaagcgaaa |
6362205 |
T |
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| Q |
401 |
ggaggaagatggggaggacaatttgtaacgaatgtgttcgagaggataaatggcgagtggtttatttgtaatcatcatgcttcaccagtagacatgaatt |
500 |
Q |
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| T |
6362204 |
ggaggaagatggggaggacaatttgtaacgaatgtgttcgagaggataaatggcgagtggtttatttgtaatcatcatgcttcaccagtagacatgaatt |
6362105 |
T |
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| Q |
501 |
gatacatagttgttgagtttgtcttg |
526 |
Q |
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| T |
6362104 |
gatacatagttgttgagtttgtcttg |
6362079 |
T |
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