View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9828_low_6 (Length: 497)

Name: NF9828_low_6
Description: NF9828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9828_low_6
NF9828_low_6
[»] chr4 (17 HSPs)
chr4 (19-291)||(8697152-8697424)
chr4 (259-406)||(39418098-39418245)
chr4 (284-417)||(10567284-10567417)
chr4 (250-385)||(3769816-3769951)
chr4 (259-387)||(49483098-49483226)
chr4 (259-410)||(21760548-21760699)
chr4 (257-367)||(2940217-2940327)
chr4 (258-326)||(32884967-32885035)
chr4 (259-383)||(48513624-48513748)
chr4 (259-350)||(11996084-11996174)
chr4 (248-385)||(35675159-35675296)
chr4 (259-363)||(35511160-35511264)
chr4 (19-91)||(8688800-8688878)
chr4 (259-367)||(44478722-44478830)
chr4 (257-337)||(52895775-52895854)
chr4 (259-338)||(25723182-25723261)
chr4 (258-355)||(33803404-33803501)
[»] chr2 (15 HSPs)
chr2 (257-439)||(5671478-5671660)
chr2 (258-409)||(29260107-29260258)
chr2 (258-387)||(34512647-34512776)
chr2 (259-419)||(14120803-14120962)
chr2 (277-408)||(1729465-1729595)
chr2 (286-387)||(747498-747599)
chr2 (257-349)||(31911143-31911235)
chr2 (257-363)||(34220624-34220730)
chr2 (399-440)||(41890231-41890272)
chr2 (259-363)||(8327005-8327109)
chr2 (259-319)||(22444019-22444079)
chr2 (259-339)||(37230269-37230349)
chr2 (334-387)||(19851673-19851726)
chr2 (257-325)||(2805446-2805514)
chr2 (400-440)||(3636371-3636411)
[»] chr3 (15 HSPs)
chr3 (259-409)||(29213340-29213490)
chr3 (257-440)||(4298285-4298469)
chr3 (257-415)||(50673054-50673211)
chr3 (257-387)||(12060037-12060167)
chr3 (284-393)||(43451517-43451626)
chr3 (259-424)||(20256068-20256231)
chr3 (331-417)||(50420655-50420741)
chr3 (259-385)||(34060745-34060872)
chr3 (257-356)||(18765-18864)
chr3 (257-328)||(46365296-46365367)
chr3 (283-387)||(17073064-17073173)
chr3 (259-356)||(48313818-48313915)
chr3 (265-329)||(46298809-46298873)
chr3 (257-294)||(15005900-15005937)
chr3 (392-440)||(29577237-29577285)
[»] chr8 (15 HSPs)
chr8 (259-418)||(39972132-39972291)
chr8 (257-411)||(13520594-13520749)
chr8 (257-411)||(13610129-13610284)
chr8 (257-387)||(5074832-5074962)
chr8 (284-410)||(35236975-35237101)
chr8 (282-412)||(8810475-8810604)
chr8 (277-397)||(5216979-5217099)
chr8 (272-367)||(7475838-7475933)
chr8 (257-387)||(36766624-36766755)
chr8 (283-337)||(11332798-11332852)
chr8 (257-338)||(7532835-7532916)
chr8 (322-413)||(43285177-43285271)
chr8 (259-318)||(39491792-39491851)
chr8 (259-357)||(11295444-11295542)
chr8 (259-357)||(31596401-31596499)
[»] chr1 (15 HSPs)
chr1 (265-410)||(36596558-36596703)
chr1 (283-415)||(40289067-40289199)
chr1 (265-384)||(21268278-21268396)
chr1 (284-438)||(12381150-12381302)
chr1 (284-438)||(12385217-12385369)
chr1 (257-387)||(15444906-15445036)
chr1 (257-363)||(41898835-41898940)
chr1 (258-318)||(34644233-34644293)
chr1 (257-337)||(43168192-43168272)
chr1 (296-367)||(23328495-23328566)
chr1 (258-316)||(21631209-21631267)
chr1 (259-365)||(27210748-27210854)
chr1 (257-444)||(44359647-44359834)
chr1 (256-326)||(27160077-27160147)
chr1 (278-336)||(40920239-40920297)
[»] chr6 (7 HSPs)
chr6 (267-440)||(26539060-26539234)
chr6 (259-409)||(32251332-32251481)
chr6 (258-410)||(31490664-31490821)
chr6 (265-387)||(28014636-28014758)
chr6 (256-412)||(19647339-19647495)
chr6 (283-357)||(27127511-27127585)
chr6 (281-357)||(21427315-21427391)
[»] chr5 (11 HSPs)
chr5 (281-367)||(24288508-24288594)
chr5 (281-367)||(24373627-24373713)
chr5 (256-351)||(6061499-6061594)
chr5 (277-367)||(12349542-12349632)
chr5 (285-367)||(39076630-39076712)
chr5 (257-365)||(41871851-41871964)
chr5 (283-367)||(678471-678555)
chr5 (259-326)||(4293811-4293878)
chr5 (359-422)||(12349662-12349725)
chr5 (257-436)||(17168628-17168807)
chr5 (258-384)||(28599633-28599759)
[»] chr7 (11 HSPs)
chr7 (256-412)||(41084774-41084930)
chr7 (307-440)||(5542994-5543127)
chr7 (258-356)||(49069587-49069685)
chr7 (307-410)||(49045263-49045366)
chr7 (277-367)||(1566930-1567020)
chr7 (257-329)||(37848303-37848375)
chr7 (259-363)||(40774222-40774326)
chr7 (283-384)||(27236813-27236914)
chr7 (250-292)||(33901345-33901388)
chr7 (257-319)||(9887216-9887278)
chr7 (284-328)||(46204158-46204202)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 8697424 - 8697152
Alignment:
19 aaaagctccattatgtacctttattccaactacataatcatcaataatcccattctttcaaggtacatatattctctttataaagcaacatagtaccttg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8697424 aaaagctccattatgtacctttattccaactacataatcatcaataatcccattctttcaaggtacatatattctctttataaagcaacatagtaccttg 8697325  T
119 tttttctattattttctaaacacaaatattttgtaacaaacatactcgataagaaattctttgtgtgagactttggtatagaagagaggcacaagcttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||    
8697324 tttttctattattttctaaacacaaatattttgtaacaaacatactcgataagacattctttgtttgagactttggtagagaagagaggaacaagcttct 8697225  T
219 tatatttgggattttacttcaagttggtataattaataggaaatgttaaagagtgtctttaggacattggtta 291  Q
    |||||||||||||||||| |||||||||||||||||| ||||| |||||||||||   ||||| |||||||||    
8697224 tatatttgggattttactccaagttggtataattaatgggaaacgttaaagagtgctcttagggcattggtta 8697152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 259 - 406
Target Start/End: Original strand, 39418098 - 39418245
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||   ||||||  |||||||||  |||||||||| |||||     
39418098 aaatgttaaagagtgtccttaggacattggttaagagtacaaatttagaaatgttgtattggataatggtaaaaagtgatatgtttgactttttaaaagt 39418197  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttcctta 406  Q
    |||||||||  | |||| ||| |||||||  |||||||| ||||||||    
39418198 taaaaaattgttgaatttaatacaaacttaccattttttgtttcctta 39418245  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 10567284 - 10567417
Alignment:
284 attggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaa 383  Q
    ||||||||||||||| || ||| ||||||||||||  |||||||||||||||||| |||||||||||| ||||  |||||||||  |||||||||| |||    
10567284 attggttaagaagactaatttaaaaatgttgtattaggaaatggtggaaagtgatggatttgactttttaaaaattaaaaaattgttaaattcaatacaa 10567383  T
384 acttgtcattttttatttccttaactaatgccct 417  Q
    |||| | ||||||| | |||| | ||||||||||    
10567384 acttattattttttgtctcctcagctaatgccct 10567417  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 3769951 - 3769816
Alignment:
250 attaataggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgactt 349  Q
    |||||| ||||||||||||||||||| || | || |||||||| | || ||| |||||||| ||| ||||| |||||||| ||||||||| |||||||||    
3769951 attaatgggaaatgttaaagagtgtccttcgaactttggttaataggataaatttagaaatattgcattgaaaaatggtgaaaagtgataaatttgactt 3769852  T
350 ttaaaaagataaaaaattcctaaattcaatgcaaac 385  Q
    || ||||| ||||| |||  ||||||||||||||||    
3769851 tttaaaagttaaaatattgttaaattcaatgcaaac 3769816  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 387
Target Start/End: Complemental strand, 49483226 - 49483098
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||| |||||||| |||||||||||||| ||| ||| |||  || |||||  |||||||| |||||||||||||||||||||  ||||     
49483226 aaatgttaaagagtgcctttaggatattggttaagaagataaatttataaaaattttattggaaaatggtgaaaagtgatagatttgactttttcaaagt 49483127  T
359 taaaaaattcctaaattcaatgcaaactt 387  Q
    |||||||||  | |||||||| |||||||    
49483126 taaaaaattattgaattcaattcaaactt 49483098  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 410
Target Start/End: Complemental strand, 21760699 - 21760548
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||| ||| |||| ||||||| | |||| ||  ||| |||||||||| |||||| ||||      
21760699 aaatgttaaagaatgtccttaagacattgattaagaagacaaatttaaaaatattgtattaaaaaatagtaaaaaatgatagatttaacttttgaaaaat 21760600  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaacta 410  Q
    |||||||||  ||||||||||| ||| ||  || |||| ||||| |||||||    
21760599 taaaaaattattaaattcaatgtaaatttaccacttttaatttctttaacta 21760548  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 2940217 - 2940327
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| |||| |||| | ||||| |||| ||||||| |||||| |||||||||||| |||| ||||||||| ||| || | |||||||||||| ||||    
2940217 ggaaatgctaaatagtgcccttagggcattagttaagaggacaaatttagaaatgttgcattgggaaatggtgaaaaatggttgatttgactttttaaaa 2940316  T
357 gataaaaaatt 367  Q
    | |||||||||    
2940317 gttaaaaaatt 2940327  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 326
Target Start/End: Original strand, 32884967 - 32885035
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatg 326  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||   ||||| |||||||||||||||    
32884967 gaaatgttaaagagtgtccttaggacattgattaagaagacaaaaaatgaaatattgtattgagaaatg 32885035  T

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Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 383
Target Start/End: Complemental strand, 48513748 - 48513624
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||| |||| ||||||||||||||||||||||||| || |||| || |||  ||||||||| ||||| || ||||||| |||||| |||||| |||||     
48513748 aaatgctaaatagtgtctttaggacattggttaagacgataaaaataaaaacattgtattgaaaaatgatgaaaagtgaaagatttaactttttaaaagt 48513649  T
359 taaaaaattcctaaattcaatgcaa 383  Q
     |||| |||  | ||||||||||||    
48513648 caaaacattgttgaattcaatgcaa 48513624  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 259 - 350
Target Start/End: Original strand, 11996084 - 11996174
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttt 350  Q
    ||||| ||||||||| | ||||| ||| |||||||| |||||| |||||||||||||||||  |||||||| |||||||||||||| |||||    
11996084 aaatgctaaagagtgcccttagggcat-ggttaagaggacaaacttagaaatgttgtattggaaaatggtgaaaagtgatagatttaacttt 11996174  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 385
Target Start/End: Original strand, 35675159 - 35675296
Alignment:
248 taattaataggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgac 347  Q
    |||||| ||||||||  |||||| || | || || |||||||||||| || |||| ||||||| |||||||| ||||| ||| ||||||||  |||| ||    
35675159 taattattaggaaattctaaagactgcccttggggcattggttaagacgataaaaatagaaatattgtattgggaaatagtgaaaagtgatgaatttaac 35675258  T
348 ttttaaaaagataaaaaattcctaaattcaatgcaaac 385  Q
    |||| ||||| ||||| |||  | ||||||||||||||    
35675259 tttttaaaagttaaaatattgttgaattcaatgcaaac 35675296  T

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Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 35511160 - 35511264
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||| |||||| ||||  |||||||||||| |||  ||| ||||||| ||||||||  |||||||| ||||||||  ||||||||||| |||||     
35511160 aaatgttaaggagtgtttttaaaacattggttaagtagatgaaaatagaaatattgtattggaaaatggtgaaaagtgatgaatttgactttttaaaagt 35511259  T
359 taaaa 363  Q
    |||||    
35511260 taaaa 35511264  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 8688878 - 8688800
Alignment:
19 aaaagctccattatgtacctttattccaactacataatcatcaat----aatccc--attctttcaaggtacatatatt 91  Q
    |||| ||||||||||||||||  ||||||||||| ||||||||||    ||||||  ||||||||||||||||||||||    
8688878 aaaaactccattatgtaccttctttccaactacaaaatcatcaatcaataatccctaattctttcaaggtacatatatt 8688800  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 367
Target Start/End: Complemental strand, 44478830 - 44478722
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||||| ||   ||||| ||||||| |||||| ||| |||||||||||||  |||| ||| ||| | || ||||| |||||| |||||     
44478830 aaatgttaaagagtgtcctttcaacatttgttaagaggacaaacttaaaaatgttgtattggaaaattgtgaaaaataatggatttaactttttaaaagt 44478731  T
359 taaaaaatt 367  Q
     ||||||||    
44478730 aaaaaaatt 44478722  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 52895854 - 52895775
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtga 337  Q
    ||||||| |||||||||||||| || |||| ||||||| || |||| ||||||  |||||||||||||| ||| |||||||    
52895854 ggaaatgctaaagagtgtctttggg-catttgttaagatgataaaaatagaaacattgtattgagaaattgtgaaaagtga 52895775  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 25723182 - 25723261
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgat 338  Q
    ||||| |||| |||||| ||||| |||| |||||||||| ||| ||| |||||||||||||| |||| ||  ||||||||    
25723182 aaatgctaaaaagtgtccttaggtcatttgttaagaagaaaaacttaaaaatgttgtattgaaaaattgttaaaagtgat 25723261  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 33803501 - 33803404
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaa 355  Q
    ||||||||||||| |||| ||| |  ||||||||||| ||||||| || |||| ||||||||| ||||  || ||| | ||| |||| ||||||||||    
33803501 gaaatgttaaagaatgtccttaaggtattggttaagaggacaaaaatataaatattgtattgaaaaattatgaaaaataataaatttaacttttaaaa 33803404  T

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Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 257 - 439
Target Start/End: Complemental strand, 5671660 - 5671478
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    |||||| |||||||||||  ||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
5671660 ggaaatattaaagagtgttcttagggcattgattaagaagataaaattagaaatgttttattgagaaatggtgaaaagtgatagatttgacttttaaaaa 5671561  T
357 gataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttagggtacttgttagcataacc 439  Q
    | |||||||||| | |||| |||||||||||  ||||||||||||||||||||| |||| |||||| | | ||||||||||||    
5671560 gttaaaaaattcttgaattgaatgcaaacttaccattttttatttccttaactagtgccattagggcattggttagcataacc 5671478  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 258 - 409
Target Start/End: Original strand, 29260107 - 29260258
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    |||||| ||||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||||||||||    
29260107 gaaatgctaaagagtgtccttaagacatttgttaagaagacaaaattagaaatgttgtactggaaaatggtgaaaagtgatagatttgacttttaaaaag 29260206  T
358 ataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaact 409  Q
     |||||||||  | |||||||||| ||||| ||||||||  |||||||||||    
29260207 ttaaaaaattgttgaattcaatgcgaacttatcatttttggtttccttaact 29260258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 258 - 387
Target Start/End: Complemental strand, 34512776 - 34512647
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    |||||||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||||   |||||||| ||||||||||||||||||||| |||||    
34512776 gaaatgttaaagagtgcccttatgacattggttaagaggacaaatttagaaatgttgtattagaaaatggtgaaaagtgatagatttgactttttaaaag 34512677  T
358 ataaaaaattcctaaattcaatgcaaactt 387  Q
     |||||||||  |||||||||| |||||||    
34512676 ttaaaaaattgttaaattcaatacaaactt 34512647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 419
Target Start/End: Original strand, 14120803 - 14120962
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||| | |||   |||||||||||| |||||| ||| |||||||||||||| |||||||| ||||||||||||||  ||||| || ||     
14120803 aaatgttaaagagtgcccttaaagcattggttaagaggacaaatttaaaaatgttgtattga-aaatggtgaaaagtgatagatttagctttttaatagt 14120901  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgccctta 419  Q
    |||||||||  ||||||||||  ||| ||  |||||||  ||||||||||||||| |||||    
14120902 taaaaaattgttaaattcaatataaatttaccatttttagtttccttaactaatgtcctta 14120962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 408
Target Start/End: Complemental strand, 1729595 - 1729465
Alignment:
277 ttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattc 376  Q
    ||||| |||||||||||| |||||| |||||||||||||||||| |||||||| ||| ||||||||||||| ||| ||||| |||||||||  | |||||    
1729595 ttagggcattggttaagaggacaaacttagaaatgttgtattgaaaaatggtgaaaaatgatagatttgac-tttgaaaagttaaaaaattgttgaattc 1729497  T
377 aatgcaaacttgtcattttttatttccttaac 408  Q
    ||| ||| |||   ||||||  ||||||||||    
1729496 aatacaagcttaatatttttagtttccttaac 1729465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 747498 - 747599
Alignment:
286 tggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaaac 385  Q
    ||||||||| |||||| |||||||||||||||||  |||| ||| |||||||||||||| |||||| ||||| |||||||||  | |||||||||| |||    
747498 tggttaagaggacaaacttagaaatgttgtattggaaaatagtgaaaagtgatagatttaactttttaaaagttaaaaaattgttgaattcaatgccaac 747597  T
386 tt 387  Q
    ||    
747598 tt 747599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 31911143 - 31911235
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgactt 349  Q
    ||||||||||||||| | | ||| | ||||||| |||| |||||| ||| |||| ||||||||  |||||||| |||||||||||||| ||||    
31911143 ggaaatgttaaagagagaccttatggcattggtcaagaggacaaacttaaaaatattgtattggaaaatggtgaaaagtgatagatttaactt 31911235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 34220624 - 34220730
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||||||||| ||| | ||| |||||||||||||| || |||| ||||||| ||| |||| ||| ||||| ||||||||  |||| | |||| ||||    
34220624 ggaaatgttaaagtgtgcccttaagacattggttaagaggataaaaatagaaatcttgcattgggaagtggtgaaaagtgatgaatttaagtttttaaaa 34220723  T
357 gataaaa 363  Q
    | |||||    
34220724 gttaaaa 34220730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 41890231 - 41890272
Alignment:
399 tttccttaactaatgcccttagggtacttgttagcataaccc 440  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
41890231 tttccttaacaaatgcccttagggcacttgttagcataaccc 41890272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 363
Target Start/End: Complemental strand, 8327109 - 8327005
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    |||| |||||||||||||||||  |||||||||||| || |||| || |||| |||  |||||||||  || ||||||| | |||| |||||| |||||     
8327109 aaatattaaagagtgtctttagatcattggttaagaggataaaaataaaaatattgctttgagaaataatgaaaagtgaaaaatttaactttttaaaagt 8327010  T
359 taaaa 363  Q
    |||||    
8327009 taaaa 8327005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Complemental strand, 22444079 - 22444019
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattg 319  Q
    ||||||||||||||||  ||| |||| |||||||||| ||||| ||||||| |||||||||    
22444079 aaatgttaaagagtgttcttaagacagtggttaagaaaacaaacttagaaaagttgtattg 22444019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 339
Target Start/End: Complemental strand, 37230349 - 37230269
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgata 339  Q
    ||||||||||||||||| ||| | |||||||||| |  | || | ||||||| ||||||||| |||||||| |||||||||    
37230349 aaatgttaaagagtgtcattaaggcattggttaatagcataagaatagaaatattgtattgaaaaatggtgaaaagtgata 37230269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 19851726 - 19851673
Alignment:
334 gtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaaactt 387  Q
    |||||||||||||||||| ||||| |||||||||  | |||||||| |||||||    
19851726 gtgatagatttgactttttaaaagttaaaaaattgttgaattcaatacaaactt 19851673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 2805514 - 2805446
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaat 325  Q
    ||||||||||||||||||| | | |||||||||||||| || |||| || || | ||||||||| ||||    
2805514 ggaaatgttaaagagtgtcctgaagacattggttaagaggataaaaatataagtattgtattgaaaaat 2805446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 3636411 - 3636371
Alignment:
400 ttccttaactaatgcccttagggtacttgttagcataaccc 440  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
3636411 ttccttaaacaatgcccttagggcacttgttagcataaccc 3636371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 259 - 409
Target Start/End: Original strand, 29213340 - 29213490
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||||| ||||| |||||||||| | |||||| ||||||| ||| |||||| |||||||| ||| ||||||||||||||||| |||||     
29213340 aaatgttaaagagtgtccttagggcattggttaataggacaaatttagaaacgttatattgaaaaatggtgaaaaatgatagatttgactttttaaaagt 29213439  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaact 409  Q
    ||||||||| || ||||||||||||||||  ||||||| |||| |||||||    
29213440 taaaaaattgctgaattcaatgcaaacttaccatttttaattttcttaact 29213490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 440
Target Start/End: Complemental strand, 4298469 - 4298285
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattg-agaaatggtggaaagtgatagatttgacttttaaaa 355  Q
    |||||||||||| |||| | ||||  |||||||||| | |||||| ||| ||||||||||||| | |||||||| ||||||||||||||||||||| |||    
4298469 ggaaatgttaaatagtgcccttagagcattggttaaaatgacaaatttaaaaatgttgtattggaaaaatggtgaaaagtgatagatttgactttttaaa 4298370  T
356 agataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttagggtacttgttagcataaccc 440  Q
    |  ||||||||| |||||||||| |||| ||| | ||||||   || |||||||| |||| ||||| |||  |||||||||||||    
4298369 aattaaaaaattactaaattcaacgcaatcttattatttttagatttcttaactagtgcctttaggataccggttagcataaccc 4298285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 257 - 415
Target Start/End: Complemental strand, 50673211 - 50673054
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| ||||||||| | ||||| ||||||||||||||  ||| ||| ||||||||||||| ||||| ||| ||||||||||||||||||||| ||||    
50673211 ggaaatgctaaagagtgcccttagggcattggttaagaaggtaaatttaaaaatgttgtattgggaaatagtgaaaagtgatagatttgactttttaaaa 50673112  T
357 gataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcc 415  Q
    | | ||||||| |  |||||||||||| ||| ||||||||| |||  ||||||| ||||    
50673111 g-ttaaaaattgcagaattcaatgcaatcttatcattttttgttttgttaactagtgcc 50673054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 257 - 387
Target Start/End: Original strand, 12060037 - 12060167
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||||||||||||| |||| ||  ||||||||||| |||||| |||||||| ||||||||  ||||| || |||||||||||||||| |||| ||||    
12060037 ggaaatgttaaagagtgcctttggggtattggttaagaggacaaatttagaaatattgtattggaaaatgatgaaaagtgatagatttgagtttttaaaa 12060136  T
357 gataaaaaattcctaaattcaatgcaaactt 387  Q
    | |||||||||  | |||||||||| |||||    
12060137 gttaaaaaattgttgaattcaatgccaactt 12060167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 43451626 - 43451517
Alignment:
284 attggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaa 383  Q
    |||| |||||| |||||| |||||||||||||| |||||||| ||| |||||||||||||||| |||| ||||| |||||||||  | ||||||||||||    
43451626 attgtttaagaggacaaatttagaaatgttgtaatgagaaattgtgaaaagtgatagatttgatttttgaaaagttaaaaaattattgaattcaatgcaa 43451527  T
384 acttgtcatt 393  Q
    |||| |||||    
43451526 acttatcatt 43451517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 259 - 424
Target Start/End: Original strand, 20256068 - 20256231
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    |||||||||||||| || ||| ||||||| ||||||||| ||| | ||||||||||||||  | ||||||| ||||||||||||||||  ||| |||||     
20256068 aaatgttaaagagtatccttatgacattgattaagaagataaattcagaaatgttgtattaggtaatggtgaaaagtgatagatttgatcttttaaaagt 20256167  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttagggta 424  Q
    |||||||||  | ||||| || ||| ||   |||||||  |||||||||||| |||||| ||||||    
20256168 taaaaaattgatgaattcgatccaagct--ccatttttggtttccttaactagtgccctaagggta 20256231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 417
Target Start/End: Complemental strand, 50420741 - 50420655
Alignment:
331 aaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgccct 417  Q
    |||||||||||||| |||||| ||||| |||||||||  | ||||||||||||| || |||||||| ||||| ||||||| ||||||    
50420741 aaagtgatagatttaactttttaaaagttaaaaaattgttgaattcaatgcaaaattttcatttttaatttctttaactagtgccct 50420655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 385
Target Start/End: Original strand, 34060745 - 34060872
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaat-tagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    ||||| ||||||||||| || |  ||||||||||||||| ||||  || |||| ||||||||| |||||||| ||||||||  |||| |||||| |||||    
34060745 aaatgctaaagagtgtccttggtgcattggttaagaagataaaaaataaaaatattgtattgaaaaatggtgaaaagtgatgaatttaactttttaaaag 34060844  T
358 ataaaaaattcctaaattcaatgcaaac 385  Q
     ||||| |||  | ||||||||||||||    
34060845 ttaaaatattgttgaattcaatgcaaac 34060872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 356
Target Start/End: Original strand, 18765 - 18864
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| ||||||||| | ||||| |||||||||||| || |||| ||||||| ||| |||| |||| |||| ||||||||  |||| |||||| ||||    
18765 ggaaatgctaaagagtgcccttagggcattggttaagaggataaaaatagaaatattgcattgggaaacggtgaaaagtgatgaatttaactttttaaaa 18864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 46365367 - 46365296
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggt 328  Q
    ||||||| ||||||||| ||||||  ||||| ||||||  |||||| ||||||| |||||||||||||||||    
46365367 ggaaatgctaaagagtgcctttagagcattgtttaagagaacaaaaatagaaatattgtattgagaaatggt 46365296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 17073064 - 17073173
Alignment:
283 cattggttaagaagacaaaattagaaatgttgtattga-----gaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattca 377  Q
    ||||| ||||||||| ||| |||||||||||| |||||     |||||||||  |||| ||||||||||||||| ||||  ||||||| |  | ||||||    
17073064 cattgattaagaagataaatttagaaatgttgcattgaaaagggaaatggtgacaagtaatagatttgacttttgaaaaattaaaaaaatgttgaattca 17073163  T
378 atgcaaactt 387  Q
    ||||||||||    
17073164 atgcaaactt 17073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 356
Target Start/End: Original strand, 48313818 - 48313915
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    |||||||||||| ||||||| || ||||| ||||||  | |||| ||||||  |||||||| ||||||||| |||| || | ||||||||||| ||||    
48313818 aaatgttaaagattgtctttggggcattgattaagatcataaaaatagaaacattgtattgggaaatggtgaaaagcgaaaaatttgactttttaaaa 48313915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 46298873 - 46298809
Alignment:
265 taaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtg 329  Q
    ||||||||| ||||| | |||||||||||| |||||| ||||||| | |||||||| ||||||||    
46298873 taaagagtgcctttaaggcattggttaagaggacaaatttagaaacgatgtattgaaaaatggtg 46298809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 15005937 - 15005900
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaaga 294  Q
    |||||||||||| ||||||||| |||||||||||||||    
15005937 ggaaatgttaaatagtgtctttgggacattggttaaga 15005900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 29577285 - 29577237
Alignment:
392 ttttttatttccttaactaatgcccttagggtacttgttagcataaccc 440  Q
    |||||||  ||||||||||||||||| |||| || ||||||||||||||    
29577285 ttttttaaatccttaactaatgccctaagggcacctgttagcataaccc 29577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 259 - 418
Target Start/End: Original strand, 39972132 - 39972291
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||  ||||||||||| |||||     
39972132 aaatgctaaagagtgcccttagggcattggttaagaagacaaatttagaaatgttgtattgggaaatggtgaaaagtgatgaatttgactttttaaaagt 39972231  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgccctt 418  Q
    |||||||||  | |||||||||||||| |   ||||||  |||||||||||| |||||||    
39972232 taaaaaattgttcaattcaatgcaaacatactatttttggtttccttaactagtgccctt 39972291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 411
Target Start/End: Complemental strand, 13520749 - 13520594
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| |||| |||||| ||| |||||||||||| | || ||| |||||||||||||| |  || |||||| ||||| ||||||||| ||||| ||||    
13520749 ggaaatgctaaaaagtgtccttaagacattggttaaaaggataaatttagaaatgttgtagtaggatatggtgaaaagtaatagatttggcttttgaaaa 13520650  T
357 gataaaaaattcctaaattcaatgcaaacttgtca-ttttttatttccttaactaa 411  Q
    | ||||||||| ||||||||||| |||||||  || |||||| |||||||||||||    
13520649 gttaaaaaattgctaaattcaatacaaacttaccatttttttgtttccttaactaa 13520594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 411
Target Start/End: Complemental strand, 13610284 - 13610129
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| |||| |||||| ||| |||||||||||| | || ||| |||||||||||||| |  || |||||| ||||| ||||||||| ||||| ||||    
13610284 ggaaatgctaaaaagtgtccttaagacattggttaaaaggataaatttagaaatgttgtagtaggatatggtgaaaagtaatagatttggcttttgaaaa 13610185  T
357 gataaaaaattcctaaattcaatgcaaacttgtca-ttttttatttccttaactaa 411  Q
    | ||||||||| ||||||||||| |||||||  || |||||| |||||||||||||    
13610184 gttaaaaaattgctaaattcaatacaaacttaccatttttttgtttccttaactaa 13610129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 387
Target Start/End: Complemental strand, 5074962 - 5074832
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| ||||||||| ||||||| |||||||||||| |||||| |||||||||||||||||  ||||| || ||| | ||||| |||||||||  |||    
5074962 ggaaatgctaaagagtgcctttagggcattggttaagatgacaaacttagaaatgttgtattggaaaatgttgaaaaattatagaattgacttttttaaa 5074863  T
357 gataaaaaattcctaaattcaatgcaaactt 387  Q
    | |||||||||  | |||||| |||||||||    
5074862 gttaaaaaattgttgaattcagtgcaaactt 5074832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 35236975 - 35237101
Alignment:
284 attggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaa 383  Q
    |||||| |||| || ||| |||||||||||||||||| || ||||| ||||||||| ||||   |||||||||| || |||||  |||||||||||||||    
35236975 attggtcaagatgataaatttagaaatgttgtattgaaaagtggtgaaaagtgataaatttactttttaaaaagttataaaatcgctaaattcaatgcaa 35237074  T
384 acttgtcattttttatttccttaacta 410  Q
    |||| ||||||||| ||| ||||||||    
35237075 acttatcattttttgttttcttaacta 35237101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 412
Target Start/End: Complemental strand, 8810604 - 8810475
Alignment:
282 acattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgc 381  Q
    ||||| ||||||| |||||| ||| ||||||||||||| ||||||||| ||||| |||||||| |||||| ||||  |||||||||  |  ||| |||||    
8810604 acattagttaagatgacaaattta-aaatgttgtattgggaaatggtgaaaagtaatagatttaactttttaaaaattaaaaaattattgtatttaatgc 8810506  T
382 aaacttgtcattttttatttccttaactaat 412  Q
    |||||| ||| ||||||||| ||||||||||    
8810505 aaacttatcaatttttattttcttaactaat 8810475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 397
Target Start/End: Original strand, 5216979 - 5217099
Alignment:
277 ttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattc 376  Q
    ||||| |||| ||||| | || ||| |||||||||||||||||| |||  ||| |||| ||||||| |||||||| ||||| |||||||||  |||||||    
5216979 ttagggcattagttaaaaggataaatttagaaatgttgtattgaaaaactgtgaaaagcgatagatctgactttttaaaagttaaaaaattgttaaattc 5217078  T
377 aatgcaaacttgtcatttttt 397  Q
    || ||||||||  ||||||||    
5217079 aacgcaaacttaccatttttt 5217099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 367
Target Start/End: Complemental strand, 7475933 - 7475838
Alignment:
272 tgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    |||| |||| |||||| |||| | || ||| ||||||||||||||||||||||||||| |||  |||||||||||||||| ||||  |||||||||    
7475933 tgtccttagaacattgattaaaaggataaatttagaaatgttgtattgagaaatggtgaaaaacgatagatttgacttttgaaaacttaaaaaatt 7475838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 257 - 387
Target Start/End: Original strand, 36766624 - 36766755
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgac-ttttaaaa 355  Q
    ||||||| |||||||||   |||||  |||| |||||| || ||| |||||||||||||||||| ||||| |  ||| ||||||||||||| ||| ||||    
36766624 ggaaatgctaaagagtgctcttagggtattgattaagaggataaatttagaaatgttgtattgaaaaatgataaaaaatgatagatttgacgtttgaaaa 36766723  T
356 agataaaaaattcctaaattcaatgcaaactt 387  Q
    || |||||||||  |||||| |||||||||||    
36766724 agttaaaaaattattaaatttaatgcaaactt 36766755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 11332798 - 11332852
Alignment:
283 cattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtga 337  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||| |||||||    
11332798 cattggttaagaagataaaaatagaaatattgtattgagaaatggtgtaaagtga 11332852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 338
Target Start/End: Complemental strand, 7532916 - 7532835
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgat 338  Q
    ||||||| ||||||||||  ||||| |||||||||||  || |||| ||||||| ||||||||  |||||||| ||||||||    
7532916 ggaaatgctaaagagtgttcttagggcattggttaaggggataaaaatagaaatattgtattggaaaatggtgaaaagtgat 7532835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 43285271 - 43285177
Alignment:
322 aaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaat---tcaatgcaaacttgtcattttttatttccttaactaatg 413  Q
    |||||||| |||||||||||||||| |||| ||||| |||||||||  | |||   ||||||  |||||  |||||||| |||||||||||||||    
43285271 aaatggtgaaaagtgatagatttgatttttgaaaagttaaaaaattgttgaattcatcaatgttaacttaccattttttgtttccttaactaatg 43285177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 39491792 - 39491851
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtatt 318  Q
    ||||||||||||||  | |||| |||||||||||||| ||||| ||| ||||||||||||    
39491792 aaatgttaaagagtacccttagaacattggttaagaaaacaaatttaaaaatgttgtatt 39491851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 357
Target Start/End: Original strand, 11295444 - 11295542
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    ||||||||||||||||| ||| ||||||||||| || ||  ||| || |||  ||||||||||||||| || ||| ||||  |||| |||||| |||||    
11295444 aaatgttaaagagtgtccttaagacattggttacgatgatgaaaatataaacattgtattgagaaatgatgaaaaatgatgaatttaactttttaaaag 11295542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 357
Target Start/End: Original strand, 31596401 - 31596499
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    ||||| ||||||||||| || |||||||| |||||| || |||| ||||||| |||| || | |||||||| ||| ||||  |||| |||||| |||||    
31596401 aaatgctaaagagtgtcattgggacattgattaagatgataaaaatagaaatattgtgttaaaaaatggtgaaaaatgatgaattttactttttaaaag 31596499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 265 - 410
Target Start/End: Complemental strand, 36596703 - 36596558
Alignment:
265 taaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaa 364  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||   || ||| ||||| |||||| |||| ||||| ||||||    
36596703 taaagagtgcctttaggacattgattaagaagacaaacttagaaatgttgtattgagaaacaatgaaaattgatatatttgaatttttaaaagttaaaaa 36596604  T
365 attcctaaattcaatgcaaacttgtcattttttatttccttaacta 410  Q
    |||  | ||||||||||||||||   |||||| ||||| |||||||    
36596603 attgttgaattcaatgcaaacttactatttttaatttctttaacta 36596558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 415
Target Start/End: Complemental strand, 40289199 - 40289067
Alignment:
283 cattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgca 382  Q
    |||||||||||| || ||| ||| ||||||||||||| ||||| ||| ||||||||||||||||||||| ||||| |||| ||||  | |||||||||||    
40289199 cattggttaagaggataaatttaaaaatgttgtattgggaaatagtgaaaagtgatagatttgacttttgaaaagttaaataattattgaattcaatgca 40289100  T
383 aacttgtcattttttatttccttaactaatgcc 415  Q
    |||||  |||||||||||| |||||||| ||||    
40289099 aacttaccattttttattttcttaactagtgcc 40289067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 21268278 - 21268396
Alignment:
265 taaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaa 364  Q
    ||||||||| | ||||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||| ||||||    
21268278 taaagagtgcccttagggcattggttaagaggacaaacttagaaatgttgtattgagaaatggtgaaaaatgatagatttaactttt-aaaagttaaaaa 21268376  T
365 attcctaaattcaatgcaaa 384  Q
    |||  | |||||||| ||||    
21268377 attgttgaattcaatacaaa 21268396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 12381302 - 12381150
Alignment:
284 attggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaa 383  Q
    ||||||||||| || | | ||| ||||||| ||||||||||| ||| || |||||||||||||||||| ||||| |||||||||  | ||||||||  ||    
12381302 attggttaagaggagatatttaaaaatgttctattgagaaatagtgaaatgtgatagatttgacttttgaaaagttaaaaaattgttgaattcaat--aa 12381205  T
384 acttgtcattttttatttccttaactaatgcccttagggtacttgttagcataac 438  Q
    ||||  |||||||| ||| |||||||| || ||| |||| ||  |||||||||||    
12381204 acttaccattttttgtttacttaactagtgtcctaagggcaccggttagcataac 12381150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 438
Target Start/End: Complemental strand, 12385369 - 12385217
Alignment:
284 attggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaa 383  Q
    ||||||||||| || | | ||| ||||||| ||||||||||| ||| || |||||||||||||||||| ||||| |||||||||  | ||||||||  ||    
12385369 attggttaagaggagatatttaaaaatgttctattgagaaatagtgaaatgtgatagatttgacttttgaaaagttaaaaaattgttgaattcaat--aa 12385272  T
384 acttgtcattttttatttccttaactaatgcccttagggtacttgttagcataac 438  Q
    ||||  |||||||| ||| |||||||| || ||| |||| ||  |||||||||||    
12385271 acttaccattttttgtttacttaactagtgtcctaagggcaccggttagcataac 12385217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 257 - 387
Target Start/End: Original strand, 15444906 - 15445036
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaa-aattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaa 355  Q
    ||||||||||||||||||  ||||||||| | ||||||  |||| ||||| |||| |||||||||||||||||| ||||| ||| | |||| |||| |||    
15444906 ggaaatgttaaagagtgttcttaggacatcgattaagagcacaagaatta-aaatattgtattgagaaatggtgaaaagtaataaagttgattttttaaa 15445004  T
356 agataaaaaattcctaaattcaatgcaaactt 387  Q
    || |||||||||  | ||||||||||||||||    
15445005 agttaaaaaattattgaattcaatgcaaactt 15445036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 363
Target Start/End: Original strand, 41898835 - 41898940
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||||||||||||||  ||||||| ||||||||||| | | || ||||||| ||||||||| |||||||  ||||||||  |||| |||||| ||||    
41898835 ggaaatgttaaagagtgttcttaggacgttggttaagaa-atacaaatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaaa 41898933  T
357 gataaaa 363  Q
    | |||||    
41898934 gttaaaa 41898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 34644293 - 34644233
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtatt 318  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||| || |||| |||||||    
34644293 gaaatgttaaagagtgtccttaggacattgattaagaagataaaaataaaaattttgtatt 34644233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 337
Target Start/End: Complemental strand, 43168272 - 43168192
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtga 337  Q
    ||||||| ||||||||| | ||||| |||||||||||| || |||| ||||||  |||||||| ||||||||| |||||||    
43168272 ggaaatgctaaagagtgcccttagggcattggttaagatgataaaaatagaaacattgtattgggaaatggtgaaaagtga 43168192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 23328566 - 23328495
Alignment:
296 gacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    |||||| ||| |||| |||||||||||||||||  ||| | ||||||||||||||| ||||| |||||||||    
23328566 gacaaacttaaaaattttgtattgagaaatggtaaaaaattatagatttgactttttaaaagttaaaaaatt 23328495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 316
Target Start/End: Original strand, 21631209 - 21631267
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgta 316  Q
    |||||| |||||||||||||| ||||||||||||||| || |||| ||||||| |||||    
21631209 gaaatgctaaagagtgtctttgggacattggttaagatgataaaaatagaaatattgta 21631267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 365
Target Start/End: Complemental strand, 27210854 - 27210748
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    |||| |||||||||||| ||||||||||| |||||| || |||| || || | ||||| ||| |||||||| ||| ||||  |||| |||||| |||||     
27210854 aaatattaaagagtgtcgttaggacattgattaagaggataaaaataaaactattgtaatgaaaaatggtgaaaaatgatcaatttaactttttaaaagt 27210755  T
359 taaaaaa 365  Q
    |||||||    
27210754 taaaaaa 27210748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 444
Target Start/End: Original strand, 44359647 - 44359834
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| ||||||||| | || || |||||||||||| || |||| ||||||  |||||| | ||||||||| |||||||   |||| |||||| ||||    
44359647 ggaaatgctaaagagtgcccttgggccattggttaagatgataaaaatagaaacattgtatcgggaaatggtgaaaagtgaagaatttaactttttaaaa 44359746  T
357 gataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttagggtacttgttagcataacccataa 444  Q
    |  |||| |||  | ||||||||| |||  |   ||||||  |||||||||| | |||||| |||| ||| |||||||  ||||||||    
44359747 gtcaaaacattgttgaattcaatgtaaatatactatttttggtttccttaaccattgccctgagggcactagttagcaagacccataa 44359834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 27160077 - 27160147
Alignment:
256 aggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatg 326  Q
    ||||||||||||||||||| ||||||  ||| |||||||||| | || || |||| ||||||||| |||||    
27160077 aggaaatgttaaagagtgtttttagggtattcgttaagaagatagaaataaaaattttgtattgaaaaatg 27160147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 40920297 - 40920239
Alignment:
278 taggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtg 336  Q
    ||||||||||||||||| || |||| ||||||| ||| |||||||| ||||| ||||||    
40920297 taggacattggttaagaggataaaaatagaaatattgcattgagaagtggtgaaaagtg 40920239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 267 - 440
Target Start/End: Complemental strand, 26539234 - 26539060
Alignment:
267 aagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgac-ttttaaaaagataaaaaa 365  Q
    ||||||| ||||||| |||| |||||||  ||||| |||||||| ||||||||| ||||| || ||| ||||||||||||| |||||||||   ||||||    
26539234 aagagtgcctttagggcattagttaagagaacaaacttagaaatattgtattgaaaaatgatgaaaattgatagatttgactttttaaaaattaaaaaaa 26539135  T
366 ttcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttagggtacttgttagcataaccc 440  Q
    ||  | ||||||||||||||||   ||||||  |||||||||||| ||||||||||  ||| |||| ||||||||    
26539134 ttgttgaattcaatgcaaacttactatttttagtttccttaactagtgcccttaggacactagttaacataaccc 26539060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 259 - 409
Target Start/End: Complemental strand, 32251481 - 32251332
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||| | ||| | ||||||||||||||||||| |||||| ||||||||||  |||||||| |||||||| ||| |||||||| |||||     
32251481 aaatgttaaagagtgcccttatggcattggttaagaagacaaacttagaagtgttgtattggtaaatggtgaaaagtgatggatctgactttt-aaaagt 32251383  T
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaact 409  Q
    |||||||||  | |||||||| ||||| |   ||||||| |||||||||||    
32251382 taaaaaattgttgaattcaatacaaacctactattttttgtttccttaact 32251332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 410
Target Start/End: Original strand, 31490664 - 31490821
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatgg-----tggaaagtgatagatttgactttta 352  Q
    |||||||||||||||| | |||||||||||||||||| |||||| ||| ||||| ||||||| |||||||     || |||||||||||||| | |||||    
31490664 gaaatgttaaagagtgcccttaggacattggttaagaggacaaacttaaaaatgatgtattgggaaatggtgaaatgaaaagtgatagatttaattttta 31490763  T
353 aaaagataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaacta 410  Q
    ||||| |||||||||  | |||||||| |||||||   ||||||  ||||||||||||    
31490764 aaaagttaaaaaattgttgaattcaatacaaacttactatttttagtttccttaacta 31490821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 387
Target Start/End: Complemental strand, 28014758 - 28014636
Alignment:
265 taaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaa 364  Q
    ||||||||| ||||||| |||||||||||| |  |||||||||||| |||||||| ||||||||| ||| ||||   |||||||||| ||||| |||||     
28014758 taaagagtgcctttagggcattggttaagagggtaaaattagaaatattgtattgggaaatggtgaaaaatgatgagtttgactttttaaaagttaaaat 28014659  T
365 attcctaaattcaatgcaaactt 387  Q
    |||  | ||| ||||||||||||    
28014658 attgttgaatccaatgcaaactt 28014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 412
Target Start/End: Original strand, 19647339 - 19647495
Alignment:
256 aggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaa 355  Q
    |||||||| |||| |||| | ||||||||| | |||||| || ||| | |||||| ||||||||| ||||  |  ||| ||||| |||||| |||  |||    
19647339 aggaaatgctaaaaagtgcccttaggacatcgattaagaggataaattgagaaatattgtattgaaaaatattaaaaattgatatatttgattttcgaaa 19647438  T
356 agataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaat 412  Q
    || ||||||||   ||||||||||||||| || ||| ||||  ||||||||||||||    
19647439 agttaaaaaatggttaaattcaatgcaaatttttcaattttggtttccttaactaat 19647495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 357
Target Start/End: Original strand, 27127511 - 27127585
Alignment:
283 cattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    ||||| |||||| || |||| ||||||| |||||||||||||||||| ||| ||||  |||| |||||| |||||    
27127511 cattgtttaagatgataaaaatagaaatattgtattgagaaatggtgaaaaatgatgaatttaactttttaaaag 27127585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 21427391 - 21427315
Alignment:
281 gacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    ||||||||||||||  ||||| ||| ||||| ||||||| ||||| ||| |||||||| ||||| || ||| |||||    
21427391 gacattggttaagagaacaaatttataaatgatgtattgggaaatagtgaaaagtgattgatttaacattttaaaag 21427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 281 - 367
Target Start/End: Complemental strand, 24288594 - 24288508
Alignment:
281 gacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| || ||||||    
24288594 gacattggttaagaggacaaacttagaaatgttgtattgagaaatggtgaaaagtgatagatttaactttttaaaagttacaaaatt 24288508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 24373627 - 24373713
Alignment:
281 gacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||| || ||||||    
24373627 gacattggttaagaggacaaacttagaaatgttgtattgagaaatggtgaaaagtgatagatttaactttttaaaagttacaaaatt 24373713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 6061594 - 6061499
Alignment:
256 aggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgactttt 351  Q
    |||||||| |||||| ||||||||||||||||||||||| |  ||| ||||||||||||||||| |||| |||| ||||||||| |||||||||||    
6061594 aggaaatgctaaagaatgtctttaggacattggttaagatggaaaatttagaaatgttgtattgggaaaaggtgaaaagtgatacatttgactttt 6061499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 12349542 - 12349632
Alignment:
277 ttaggacattggttaagaagacaaaattagaaatgttgtat-tgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    ||||| |||||||||||| |||||| ||| ||||||||||| ||| |||||||| ||||||||||||||||||||| ||||| |||||||||    
12349542 ttagggcattggttaagaggacaaatttaaaaatgttgtatatga-aaatggtgaaaagtgatagatttgactttttaaaagttaaaaaatt 12349632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 285 - 367
Target Start/End: Complemental strand, 39076712 - 39076630
Alignment:
285 ttggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||  ||| |||||| ||| | |||| ||||| |||||||||    
39076712 ttggttaagagaacaaatttagaaatgttgtattgagaaatggtaaaaaatgataggtttaattttttaaaagttaaaaaatt 39076630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 41871851 - 41871964
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtg-----gaaagtgatagatttgactttt 351  Q
    |||| ||||||||||||||  | |||||||||||||||  ||||| ||| |||||||||||| | ||||||||      ||||||||| |||||||||||    
41871851 ggaagtgttaaagagtgtccattggacattggttaagagcacaaatttaaaaatgttgtattaaaaaatggtgaaaattaaagtgatacatttgactttt 41871950  T
352 aaaaagataaaaaa 365  Q
     ||||| |||||||    
41871951 gaaaagttaaaaaa 41871964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 367
Target Start/End: Complemental strand, 678555 - 678471
Alignment:
283 cattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    |||||||||||| ||||||| ||||| ||||||||||  |||||||| ||||| ||  |||| || ||| ||||| |||||||||    
678555 cattggttaagaggacaaaaatagaattgttgtattggaaaatggtgaaaagtaatgaatttaaccttttaaaagttaaaaaatt 678471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 326
Target Start/End: Original strand, 4293811 - 4293878
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatg 326  Q
    ||||||||||||||||  ||||| |||||||||| | || |||| ||| ||| |||||||||||||||    
4293811 aaatgttaaagagtgttcttagggcattggttaaaaggataaaaatagtaatattgtattgagaaatg 4293878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 12349662 - 12349725
Alignment:
359 taaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttaggg 422  Q
    |||||||||  | |||||| |||||||||  ||||||||||||||||||||| |||||| ||||    
12349662 taaaaaattgttgaattcattgcaaacttaccattttttatttccttaactagtgccctgaggg 12349725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 436
Target Start/End: Complemental strand, 17168807 - 17168628
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||| |||||||||   ||| | ||||||||||||||| | || ||||||| ||| ||||| ||| |||| ||| ||||  ||||||||||| ||||    
17168807 ggaaatgctaaagagtgcacttaaggcattggttaagaagatacaaatagaaatattgcattgaaaaacggtgaaaaatgatgaatttgactttttaaaa 17168708  T
357 gataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaatgcccttagggtacttgttagcata 436  Q
      ||||| ||| || |||||  ||||||| |   | ||||  || ||||||| | ||| ||||||| |||||||||||||    
17168707 tttaaaatattgctgaattccttgcaaacctactacttttggttcccttaacaagtgcgcttagggcacttgttagcata 17168628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 28599633 - 28599759
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaag 357  Q
    ||||||||||  ||||| |||||| ||||||||||||  |||  | || |||| || |||||  |||| ||| ||| ||||| ||||||||||| |||||    
28599633 gaaatgttaacaagtgtttttagggcattggttaagagcacatgaataaaaatattatattggaaaatagtgaaaaatgataaatttgactttttaaaag 28599732  T
358 ataaaaaattcctaaattcaatgcaaa 384  Q
     |||||| ||  | |||||||||||||    
28599733 ttaaaaatttattgaattcaatgcaaa 28599759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 412
Target Start/End: Complemental strand, 41084930 - 41084774
Alignment:
256 aggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaa 355  Q
    ||||||||| ||||||||  |||||| ||||| |||| | |||||| ||| |||  ||||||||||||||  || ||| |||||||||| |||||| |||    
41084930 aggaaatgtcaaagagtgcttttagggcattgattaaaaggacaaatttaaaaaaattgtattgagaaataatgaaaattgatagatttaactttttaaa 41084831  T
356 agataaaaaattcctaaattcaatgcaaacttgtcattttttatttccttaactaat 412  Q
    || |||||||||  | || ||||| ||||||| |||||||||||||||| |||||||    
41084830 agttaaaaaattattgaactcaatacaaacttatcattttttatttcctcaactaat 41084774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 307 - 440
Target Start/End: Complemental strand, 5543127 - 5542994
Alignment:
307 aaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaaacttgtcattttttatttcctta 406  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||  | ||||||| |||||||||  ||||||  ||| ||||    
5543127 aaatattgtattgagaaatggtgaaaagtgatatatttgactttttaaaagttaaaaaattgttgaattcaacgcaaacttgctatttttagttttctta 5543028  T
407 actaatgcccttagggtacttgttagcataaccc 440  Q
    ||||||  ||| | || ||| |||||||||||||    
5543027 actaatatcctaacggcactggttagcataaccc 5542994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 356
Target Start/End: Complemental strand, 49069685 - 49069587
Alignment:
258 gaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaa 356  Q
    ||||||||||||||||||||| || |||||| |||||||| |||| ||||||| | ||||||| |||||||| ||||||||| || | |||||| ||||    
49069685 gaaatgttaaagagtgtctttggggcattggataagaagataaaaatagaaatatagtattgaaaaatggtgaaaagtgataaatctaactttttaaaa 49069587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 410
Target Start/End: Complemental strand, 49045366 - 49045263
Alignment:
307 aaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgcaaacttgtcattttttatttcctta 406  Q
    ||||||||||||  ||||||||| |||||  ||| |||||||||| ||||| |||||||||  | ||||||||||||||||  |||||||| ||| |||     
49045366 aaatgttgtattaggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 49045267  T
407 acta 410  Q
    ||||    
49045266 acta 49045263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 1566930 - 1567020
Alignment:
277 ttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaatt 367  Q
    |||||||||||||||||| || ||| ||| |||  ||||||||||||| |||| ||||||||| |||||| |||| ||||  |||||||||    
1566930 ttaggacattggttaagatgataaatttataaaaattgtattgagaaacggtgaaaagtgataaatttgatttttgaaaaactaaaaaatt 1567020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 37848303 - 37848375
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtg 329  Q
    ||||||||||||||||| | ||||| |||||||||||| |||||| ||| |||| ||||||||  ||||||||    
37848303 ggaaatgttaaagagtgcccttagggcattggttaagaggacaaacttaaaaatattgtattggaaaatggtg 37848375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 40774222 - 40774326
Alignment:
259 aaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaaga 358  Q
    ||||||||||||||||| || |||||||| ||||||||| | || ||||||| ||| ||||| ||||| || ||| ||||  |||| |||||| |||||     
40774222 aaatgttaaagagtgtcattgggacattgattaagaagatacaaatagaaatattgcattgaaaaatgatgaaaattgatgaatttaactttttaaaagt 40774321  T
359 taaaa 363  Q
    |||||    
40774322 taaaa 40774326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 384
Target Start/End: Original strand, 27236813 - 27236914
Alignment:
283 cattggttaagaagacaaaattagaaatgttgtattgagaaatggtggaaagtgatagatttgacttttaaaaagataaaaaattcctaaattcaatgca 382  Q
    |||||||||||| |||||| ||| |||| ||||| ||  ||||| || ||| ||||||||||||||| | ||||| |||||||||  | |||||||| ||    
27236813 cattggttaagaggacaaacttataaatattgtaatggaaaatgatgaaaaatgatagatttgacttcttaaaagttaaaaaattgttgaattcaataca 27236912  T
383 aa 384  Q
    ||    
27236913 aa 27236914  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 33901388 - 33901345
Alignment:
250 attaataggaaa-tgttaaagagtgtctttaggacattggttaa 292  Q
    |||||||||||| || ||||||||||||||||||||||||||||    
33901388 attaataggaaaatgctaaagagtgtctttaggacattggttaa 33901345  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 9887278 - 9887216
Alignment:
257 ggaaatgttaaagagtgtctttaggacattggttaagaagacaaaattagaaatgttgtattg 319  Q
    ||||||||||||||||  | |||||||||||||||||| || |||| ||||||| ||| ||||    
9887278 ggaaatgttaaagagtacccttaggacattggttaagaggataaaaatagaaatattgcattg 9887216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 46204202 - 46204158
Alignment:
284 attggttaagaagacaaaattagaaatgttgtattgagaaatggt 328  Q
    |||||||||||||||||| |||||||||  ||||||| |||||||    
46204202 attggttaagaagacaaatttagaaatgccgtattgaaaaatggt 46204158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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