View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_high_1 (Length: 628)
Name: NF9829_high_1
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_high_1 |
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| [»] scaffold0373 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 14 - 611
Target Start/End: Original strand, 34778140 - 34778737
Alignment:
| Q |
14 |
tagggaccaaattgatagtaagtggttgaaatctatgaagcacattcaactcaaatttggtgcatactcgagtggattgccctatgtatcagaccaagaa |
113 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34778140 |
tagggaccaaattgatagcaagtcgttgaaatctatgaagcacatacaactcaaattaggtgcatactcgagtggattgccctatgtatcagaccaagaa |
34778239 |
T |
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| Q |
114 |
ccgaatttcccaattcaaaccatggcaaaacaaagaccgatgatctacaaagaggattgccgcccaattcaagagttggttgatcgtgttgacagggtag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34778240 |
ccgaatttcccaattcaaaccatggcaaaacaaagaccgatgatctacaaagaggattgccgcacaattcaagagttggttgatcgtgttgacagggtag |
34778339 |
T |
|
| Q |
214 |
accgtcatgtcctggtttcagacatgcgtcgccgtacgacaccaccagacactgacacatgtgattacacttaattgtcattttctcaaattatcggtgt |
313 |
Q |
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|||||| |||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34778340 |
accgtcgtgtcctagtgtcggacatgcgtcgccgtatgacaccaccagacactgacacatgtgattacacttaattgtcattttctcaaattatcggtgt |
34778439 |
T |
|
| Q |
314 |
tggcatgttggtgcccgtgtctgtgcttcataggttgaaatataaggactaaattgacagtaagtagtaaaatatggggaccaactttatagtttaatag |
413 |
Q |
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| T |
34778440 |
tggcatgttggtgtccgtgtctgtgcttcataggttgaaatataaggactaaattgacagtaagtagtaaaatatggggaccaactttatagtttaatag |
34778539 |
T |
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| Q |
414 |
agtctaggaattttgagatattctaatttcaaggacctactcaagagcccacaaagtcagagactagtttggtggtttactccaaatttatttctctaaa |
513 |
Q |
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| T |
34778540 |
agtctaggaattttgagatattctaatttcaaggacctactcaagagcccacaaagtcagagactagtttggtggtttactccaaatttatttctctaaa |
34778639 |
T |
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| Q |
514 |
aagtggcgatccttactagaacaaacaaccagaacttggcaactaggtttggatgtcgatgttaacattgacgaggttgagtaaggagaaattgtaac |
611 |
Q |
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| T |
34778640 |
aagtggcgatccttactagaacaaacaaccagaacttggcaactaggtttggatgtcgatgttaacattgacgaggttgagtaaggagaaattgtaac |
34778737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 2447228 - 2447270
Alignment:
| Q |
264 |
actgacacatgtgattacacttaattgtcattttctcaaatta |
306 |
Q |
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| T |
2447228 |
actgacacatgtgattacatttaattgtcattttcttaaatta |
2447270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 24764826 - 24764869
Alignment:
| Q |
261 |
gacactgacacatgtgattacacttaattgtcattttctcaaat |
304 |
Q |
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| T |
24764826 |
gacagtgacacatgtgattacatttaattgtcattttttcaaat |
24764869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 1225 - 1265
Alignment:
| Q |
267 |
gacacatgtgattacacttaattgtcattttctcaaattat |
307 |
Q |
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| T |
1225 |
gacacatgtgattacattcaattgtcattttctcaaattat |
1265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 6844652 - 6844692
Alignment:
| Q |
267 |
gacacatgtgattacacttaattgtcattttctcaaattat |
307 |
Q |
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| T |
6844652 |
gacacatgtgattacattcaattgtcattttctcaaattat |
6844692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 52774862 - 52774894
Alignment:
| Q |
13 |
atagggaccaaattgatagtaagtggttgaaat |
45 |
Q |
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| T |
52774862 |
atagggaccaaattgatagtaagtggttaaaat |
52774894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 37776039 - 37775993
Alignment:
| Q |
262 |
acactgacacatgtgattacacttaat--tgtcattttctcaaatta |
306 |
Q |
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| T |
37776039 |
acactgacacatgtgattacatttaattatgtcattttctcaaatta |
37775993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 26393035 - 26392970
Alignment:
| Q |
357 |
aaggactaaattgacagtaagtagtaaaatatggggaccaactttatagtttaatagagtctagga |
422 |
Q |
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| T |
26393035 |
aaggaccaaattgatagtaaatggttaaatatagggaccaacttgacagtttaatagagtcgagga |
26392970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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