View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9829_high_10 (Length: 340)
Name: NF9829_high_10
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 107 - 324
Target Start/End: Original strand, 31691384 - 31691601
Alignment:
| Q |
107 |
gtattctcacatattcttcagaaccctacttcaagaacaagagaactacaccaagctagaagagacattggaaggtacaaagagagtagatggacagcag |
206 |
Q |
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| T |
31691384 |
gtattctcacatattcttcagaaccctacttcaagaacaagagaactacaccaagctagacgagacattggaaggtacaaagagagtagatggacagcag |
31691483 |
T |
|
| Q |
207 |
aatctgcaaaatctcaagcagaatctgagctttcaaatgctaaaaagacaatgaaaaatctctcttctatgattgaggaatcaagttacaaggctaaggc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691484 |
aatctgcaaaatctcaagcagaatctgagctttcaaatgctaaaaagacaatgaaaaatctctcttctatgattgaggaatcaagttacaaggctaaggc |
31691583 |
T |
|
| Q |
307 |
gaaaatgaaggacataga |
324 |
Q |
| |
|
|||||||||||||||||| |
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| T |
31691584 |
gaaaatgaaggacataga |
31691601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31691278 - 31691352
Alignment:
| Q |
1 |
ttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgaggcattcttttgttaac |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691278 |
ttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgaggcattcttttgttaac |
31691352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31167889 - 31167861
Alignment:
| Q |
1 |
ttaattaagttgtttatccaaacagagtc |
29 |
Q |
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| T |
31167889 |
ttaattaagttgtttatccaaacagagtc |
31167861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33284161 - 33284129
Alignment:
| Q |
1 |
ttaattaagttgtttatccaaacagagtcatct |
33 |
Q |
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|||||||||||||||||||||||||| |||||| |
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|
| T |
33284161 |
ttaattaagttgtttatccaaacagaatcatct |
33284129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6772703 - 6772731
Alignment:
| Q |
1 |
ttaattaagttgtttatccaaacagagtc |
29 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
6772703 |
ttaattaagttgtttatccaaacagagtc |
6772731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6933125 - 6933153
Alignment:
| Q |
1 |
ttaattaagttgtttatccaaacagagtc |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
6933125 |
ttaattaagttgtttatccaaacagagtc |
6933153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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