View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9829_high_14 (Length: 248)
Name: NF9829_high_14
Description: NF9829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9829_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38315240 - 38314995
Alignment:
| Q |
1 |
ttcatgcttaacacagatggttggtcattgttacatatagatatagcagtgttcaaaggtgaaagaaattaaatatgcagccaggtgctttaaaaccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38315240 |
ttcatgcttaacacagatggttggtcattgttacatatagatatagcagtgttcaaaggtgaaagaaattaaatatgcagccaggtgctttaaaaccaaa |
38315141 |
T |
|
| Q |
101 |
attatgttaattgctttgctgtaatggtttggatatggatataacca-----------aaataaaacaaaacaaatgattgatttataaaccaatccatc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38315140 |
attatgttaattgctttgctgtaatggtttggatatggatataaccaaaatcagaacaaaataaaacaaaacaaatgattgatttataaaccaatccatc |
38315041 |
T |
|
| Q |
190 |
tttgataatataaacaattcacaataaaaaggacaatttccactct |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38315040 |
tttgataatataaacaattcacaataaaaaagacaatttccactct |
38314995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 38848744 - 38848818
Alignment:
| Q |
67 |
aattaaatatgcagccaggtgctttaaaaccaaaattatgttaattgctttgctgtaatggtttggatatggata |
141 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||| ||||||| | |||||||||||||||| |||| |
|
|
| T |
38848744 |
aattaaatatgcagccaggtgctttaaagccaaaatcatgtttattgcttgggagtaatggtttggatattgata |
38848818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University